PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.16G039600.2.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

Dof

Protein Properties

Length: 158aa MW: 17687.2 Da PI: 9.5619

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.16G039600.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.6	6.7e-39	38	96	2	60
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 +ek+++cprC+s++tkfCy+nny+++qPr+fCk+C+ryWt+GGalrnvPvG+grrknk Manes.16G039600.2.p 38 PEKIISCPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKNKP 96 68999****************************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-28	37	95	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.3E-32	40	95	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.276	42	96	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	44	80	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 158 aa Download sequence Send to blast
MATQEVGIKL FGTTITLHAR QIKEDQNNQE NPSPEKRPEK IISCPRCKSM ETKFCYFNNY 60 NVNQPRHFCK GCQRYWTAGG ALRNVPVGAG RRKNKPPCRG GLGGFPEGCL YDGSGDVHQI 120 ELDSGLLLKE WLLVADDGSR HVYPMKRRRR SSGCQTS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Transcriptional repressor of 'CONSTANS' expression (By similarity). Regulates a photoperiodic flowering response. {ECO:0000250, ECO:0000269\|PubMed:19619493}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.16G039600.2.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. The transcript level rises progressively from dawn and decreases during the night. {ECO:0000269\|PubMed:19619493}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021597928.1	1e-112	dof zinc finger protein DOF1.5-like
Swissprot	O22967	5e-57	CDF4_ARATH; Cyclic dof factor 4
TrEMBL	A0A2C9U8P0	1e-115	A0A2C9U8P0_MANES; Uncharacterized protein
STRING	cassava4.1_018110m	1e-111	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34140.1	2e-59	Dof family protein

Link Out ? help Back to Top
Phytozome	Manes.16G039600.2.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Bueso E, et al. Arabidopsis COGWHEEL1 links light perception and gibberellins with seed tolerance to deterioration. Plant J., 2016. 87(6): p. 583-96 [PMID:27227784]