PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.16G079600.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB_related
Protein Properties Length: 268aa    MW: 28847.5 Da    PI: 9.2187
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.16G079600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.81.1e-12105149347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +W++eE+  ++ + ++lG+g+W+ I+r   ++Rt+ q+ s+ qky
  Manes.16G079600.1.p 105 AWSKEEHRMFLLGLHELGKGDWRGISRNYVTTRTPTQVASHAQKY 149
                          7*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.548320IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129415.74598154IPR017930Myb domain
SuperFamilySSF466892.32E-1699154IPR009057Homeodomain-like
TIGRFAMsTIGR015575.4E-17101153IPR006447Myb domain, plants
SMARTSM007177.5E-10102152IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-9103148IPR009057Homeodomain-like
PfamPF002491.4E-10105149IPR001005SANT/Myb domain
CDDcd001675.98E-9105150No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MGRKCSHCGN LGHNSRTCTS QKESLRLFGV QLNLSCASSS SSSSSLVSLK KCFSVDCLSS  60
PSTSSSSSCS GSLLVPVGEN IDKFSNGFLF DGLLGRTQER KKGVAWSKEE HRMFLLGLHE  120
LGKGDWRGIS RNYVTTRTPT QVASHAQKYF LRQNTLDNRK RRPSLFDMDS GQSSVQPLNV  180
GVSKLITESD DILGGGLALK TTEASPSSLH PVSKSPTRLS TKPFNSEPAC FGSTNSTNLQ  240
CATPDLELKI AAPSSMDQRE TLAQVTF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.16G079600.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021596744.10.0transcription factor KUA1-like
TrEMBLA0A2C9UAR10.0A0A2C9UAR1_MANES; Uncharacterized protein
STRINGcassava4.1_013973m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32133271
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.14e-47MYB_related family protein