PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.16G080400.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family GATA
Protein Properties Length: 306aa    MW: 33804.3 Da    PI: 9.3309
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.16G080400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.93.4e-19175208134
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                          C+ C+tt+TplWR+gp+g+k+LCnaCG+++rk +
  Manes.16G080400.1.p 175 CADCNTTSTPLWRSGPQGPKSLCNACGIRQRKAR 208
                          *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577163.47E-12168209No hitNo description
SMARTSM004016.8E-19169221IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.888169205IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.106.3E-16173208IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.55E-13174206No hitNo description
PROSITE patternPS003440175200IPR000679Zinc finger, GATA-type
PfamPF003208.1E-17175208IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MTPFYLNPPT SSPFPVVEIR EDQQHLQLFL SPHQAAASLS SAPAFFDTTG HDQDQRGAQL  60
GGSRQHHQED DKYILQSRWS DDHHKPLSSS SFQAPAISES NSNEVQKFFS CKREDGDYEG  120
SVGEGSAAKW MPSKMRLMHK MMNSSSNFSA TDEPVKFTVK FQDQQCHTNN NIRVCADCNT  180
TSTPLWRSGP QGPKSLCNAC GIRQRKARRA MAAAAAMANG TVVAMETSPM KTKMHNKEKK  240
LRTGHIAQGK KLRKPLDLAQ GQKKLCSFKN LAISLSKNSA LQRVFPQDVE EAAILLMELS  300
CGFIS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.16G080400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021596891.10.0putative GATA transcription factor 22
TrEMBLA0A2C9U9U20.0A0A2C9U9U2_MANES; Uncharacterized protein
STRINGcassava4.1_031585m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19923484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.11e-29cytokinin-responsive gata factor 1