PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.16G081100.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family LBD
Protein Properties Length: 214aa    MW: 23436.5 Da    PI: 8.2056
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.16G081100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260120.59.6e-38101111101
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleq 89 
                          aCaaCk+lr+kCa+dC+lapyfp++++++f n+hklFG+s++lk+l++l+++e +++a++s++y+A+arardPv G+ ++i++l++q+e 
  Manes.16G081100.1.p  10 ACAACKYLRKKCAADCPLAPYFPSNHSSDFLNAHKLFGVSKILKTLNKLRTSEeKKNAIKSMIYQANARARDPVGGCSRIISQLKNQIEF 99 
                          7************************************************766659*********************************** PP

               DUF260  90 lkaelallkeel 101
                           + +l+l+++++
  Manes.16G081100.1.p 100 YQLQLSLVRQQI 111
                          ********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089124.1889111IPR004883Lateral organ boundaries, LOB
PfamPF031959.2E-3610108IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MITASTGSQA CAACKYLRKK CAADCPLAPY FPSNHSSDFL NAHKLFGVSK ILKTLNKLRT  60
SEEKKNAIKS MIYQANARAR DPVGGCSRII SQLKNQIEFY QLQLSLVRQQ IEFHQRLPLN  120
DDLQVSPIDI YDATTLESSG YPTPSIVQKR SYQIDDAVAN IDMEKLSLSG LSGHGSQPSS  180
SGNEAVAVDA SQDVKPFLGE FHERDNTVGL LKN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A7e-2431114111LOB family transfactor Ramosa2.1
5ly0_B7e-2431114111LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.16G081100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021596673.11e-158LOB domain-containing protein 7-like
SwissprotQ9SSM91e-32LBD7_ARATH; LOB domain-containing protein 7
TrEMBLA0A2C9UAT61e-157A0A2C9UAT6_MANES; Uncharacterized protein
STRINGcassava4.1_025975m1e-152(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41333259
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72980.18e-35LOB domain-containing protein 7