PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.16G083400.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family WRKY
Protein Properties Length: 165aa    MW: 18486.5 Da    PI: 5.3653
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.16G083400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.62.9e-29102161159
                          ---SS-EEEEEEE--TT-SS-.EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefp.rsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDg++WrKYG+K+vk+s++p r+YYrC+ +gCpvkk+ver++ed ++v++tYeg Hnh+
  Manes.16G083400.1.p 102 LDDGFKWRKYGKKMVKNSPNPsRNYYRCSVEGCPVKKRVERDREDLTYVITTYEGVHNHP 161
                          59******************889************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.1E-3189161IPR003657WRKY domain
SuperFamilySSF1182906.67E-2695162IPR003657WRKY domain
PROSITE profilePS5081127.62397163IPR003657WRKY domain
SMARTSM007748.2E-33102162IPR003657WRKY domain
PfamPF031061.4E-22103161IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MYECVYSGCN YAAAPDSNYG ELTNFEPSDF LKFDEWTEEE EEEKSFLLCV SPNNPVYQAH  60
VMGESGGATG SHGGPSVGGE GREKKEVKGR VAFKTKSEVE ILDDGFKWRK YGKKMVKNSP  120
NPSRNYYRCS VEGCPVKKRV ERDREDLTYV ITTYEGVHNH PCSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-2290160271WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.16G083400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT8275800.0KT827580.1 Manihot esculenta WRKY transcription factor 5 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021597996.11e-115probable WRKY transcription factor 51 isoform X1
TrEMBLA0A2C9UAV51e-118A0A2C9UAV5_MANES; Uncharacterized protein
STRINGcassava4.1_031483m1e-105(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF112034110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.18e-40WRKY DNA-binding protein 50
Publications ? help Back to Top
  1. Wei Y, et al.
    Genome-Wide Identification and Expression Analysis of the WRKY Gene Family in Cassava.
    Front Plant Sci, 2016. 7: p. 25
    [PMID:26904033]