PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.16G085200.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB
Protein Properties Length: 265aa    MW: 29774.6 Da    PI: 7.7846
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.16G085200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.83.2e-151461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg+WT+ Ed +l  +v+  G g W+  +++ g++R++k+c++rw++yl
  Manes.16G085200.1.p 14 RGAWTAMEDRILTAYVTANGEGKWRNLPKRAGLKRCGKSCRLRWLNYL 61
                         89********************************************97 PP
2Myb_DNA-binding51.72.1e-1667111147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rg+ + +E+el+++++k+lG++ W++Ia +++ gRt++++k++w++ 
  Manes.16G085200.1.p  67 RGNISHDEEELIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNTT 111
                          78999*****************.*********.************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.9E-22564IPR009057Homeodomain-like
PROSITE profilePS5129415.263961IPR017930Myb domain
SuperFamilySSF466896.25E-2712108IPR009057Homeodomain-like
SMARTSM007172.3E-111363IPR001005SANT/Myb domain
PfamPF002492.7E-121461IPR001005SANT/Myb domain
CDDcd001672.53E-81661No hitNo description
PROSITE profilePS5129426.1262116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.0E-2465115IPR009057Homeodomain-like
SMARTSM007179.4E-1666114IPR001005SANT/Myb domain
PfamPF002492.1E-1467111IPR001005SANT/Myb domain
CDDcd001679.42E-1271112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006633Biological Processfatty acid biosynthetic process
GO:0006970Biological Processresponse to osmotic stress
GO:0010023Biological Processproanthocyanidin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MGRSPCCSKE GLNRGAWTAM EDRILTAYVT ANGEGKWRNL PKRAGLKRCG KSCRLRWLNY  60
LRPDIKRGNI SHDEEELIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT TLRKKASAQS  120
TSPQSNYSRQ KRLATEPNSS PQPAKVIRTR ATRCTKVLIP SQSPPLLPEF HPSQDLDSSP  180
PLHCGAVTNE EVDQDLDLLN FLDCRGFQDS HGDGALLDFQ SKDLALEDPP MFKDLANTAS  240
LEDNANLDLD SLVYLLDSEE WPLH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C8e-261211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.16G085200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM6007321e-112HM600732.1 Jatropha curcas R2R3 MYB transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021596755.10.0myb-related protein 308-like
TrEMBLA0A2C9UA270.0A0A2C9UA27_MANES; Uncharacterized protein
STRINGcassava4.1_014074m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.18e-64MYB family protein