PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.16G096900.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

MYB

Protein Properties

Length: 239aa MW: 27056 Da PI: 10.0627

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.16G096900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.4	1.2e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W++ Ed++lv+++k++G g W+ +r+ g++R++k+c++rw++yl Manes.16G096900.1.p 14 RGPWSAPEDKILVNYIKLHGEGKWRDLPRRAGLKRCGKSCRLRWLNYL 61 89********************************************97 PP
2	Myb_DNA-binding	50.4	5e-16	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ + +E++l+++++k+lG++ W++Ia +++ gRt++++k++w+++l Manes.16G096900.1.p 67 RGNISVDEEDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 112 788999**************.*****.**********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.4E-22	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	16.305	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	4.3E-29	12	108	IPR009057	Homeodomain-like
SMART	SM00717	8.2E-13	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	2.2E-14	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	1.70E-9	16	61	No hit	No description
PROSITE profile	PS51294	24.927	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.5E-24	65	115	IPR009057	Homeodomain-like
SMART	SM00717	7.9E-16	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	2.0E-14	67	112	IPR001005	SANT/Myb domain
CDD	cd00167	4.98E-11	71	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence Send to blast
MGRRPCCSKE GLNRGPWSAP EDKILVNYIK LHGEGKWRDL PRRAGLKRCG KSCRLRWLNY 60 LRPGIKRGNI SVDEEDLIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNS HLRKRAKGEK 120 GSREYSGKQL LSKEKKITSP PPSPPAGVVQ TKPVRCNKVV IIPQALDKEH VTQKKAAESQ 180 RNLSCSALQQ QEDNSLDLLL DNFDIDNFLL LEAPNSELDQ AQLNINEFHE NALGAGYY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	3e-26	12	116	25	128	MYB TRANSFORMING PROTEIN
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.16G096900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021597363.1	1e-175	transcription factor MYB114-like
TrEMBL	A0A2C9UB91	1e-174	A0A2C9UB91_MANES; Uncharacterized protein
STRING	cassava4.1_015101m	1e-174	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF31	34	817

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13540.1	1e-62	myb domain protein 5

Link Out ? help Back to Top
Phytozome	Manes.16G096900.1.p