PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.16G106000.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB
Protein Properties Length: 285aa    MW: 31474.4 Da    PI: 7.8687
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.16G106000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.52.3e-161462148
                         TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                         rg+W++eEd  l+++ +++G+g +W + +r+ g++R++k+c++rw++yl
  Manes.16G106000.1.p 14 RGPWSAEEDATLKNYLQKHGTGgNWISLPRKAGLKRCGKSCRLRWLNYL 62
                         89*********************************************97 PP
2Myb_DNA-binding44.14.7e-1469111246
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          g +T+eEd+l+  +   +G++ W+ Ia++++ gRt++++k++w++
  Manes.16G106000.1.p  69 GGFTEEEDDLICSLYSSMGSR-WSVIASRLP-GRTDNDVKNYWNT 111
                          569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.678962IPR017930Myb domain
SuperFamilySSF466895.47E-2811109IPR009057Homeodomain-like
SMARTSM007171.1E-111364IPR001005SANT/Myb domain
PfamPF002491.0E-141462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.7E-241569IPR009057Homeodomain-like
CDDcd001675.29E-91662No hitNo description
PROSITE profilePS5129422.03763117IPR017930Myb domain
SMARTSM007171.0E-1367115IPR001005SANT/Myb domain
PfamPF002496.3E-1369111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-2470117IPR009057Homeodomain-like
CDDcd001678.40E-1171113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MGRAPCCDKA NVKRGPWSAE EDATLKNYLQ KHGTGGNWIS LPRKAGLKRC GKSCRLRWLN  60
YLRPDIKHGG FTEEEDDLIC SLYSSMGSRW SVIASRLPGR TDNDVKNYWN TKLKKKMLEG  120
KLDAKKSSKI RNKIDISINN CNDPVVQFSA FSVPESETYN PGNSSPCFSA YSTTLPPLME  180
MGSFQQCCDP QFQGLILNQT QFPISSFMEV PSFGTSGCDS YSVSSSHQEA SSLVPSDSNR  240
YSISSGNGSL VKDNGFEFLY DELLNDLGFQ GKFSPEVAPF LGNN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-25141177108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.16G106000.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021596184.10.0transcription factor MYB87-like
TrEMBLA0A2C9UAP60.0A0A2C9UAP6_MANES; Uncharacterized protein
STRINGcassava4.1_022461m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37780.19e-72myb domain protein 87