PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.16G116200.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family HSF
Protein Properties Length: 366aa    MW: 40749.4 Da    PI: 8.1783
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.16G116200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.61.3e-35581502103
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          F++k+y+i++d+++++li+w + +nsf+v+d+ +f++++Lp yFkh+nf+SFvRQLn+YgF+kv+ ++         weF++++F +g+k
  Manes.16G116200.1.p  58 FVMKTYQIVNDPATDTLITWGKANNSFIVIDPLDFSQRILPVYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEWFLRGQK 138
                          9****************************************************************999.........************* PP

                          XXXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkkse 103
                          +ll++i r+k++
  Manes.16G116200.1.p 139 QLLKNIVRRKHS 150
                          ********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004158.6E-5254147IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467858.25E-3455147IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.6E-3655147IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000565.1E-185881IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004476.6E-3058147IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.1E-1896108IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434097121IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.1E-18109121IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MSKKEKKEAN ATNRSSSSIF AGEKDALLLP LDASREKKEI IQLCRVYGME PNTIVAPFVM  60
KTYQIVNDPA TDTLITWGKA NNSFIVIDPL DFSQRILPVY FKHNNFSSFV RQLNTYGFRK  120
VDPDRWEFAN EWFLRGQKQL LKNIVRRKHS KGSCMQSKIE DFDNEELVME IARLKQEQRV  180
LEKELEGMNK RLEATERRPQ QMMSFLYKVV QDPDLLPRMI LQKERTRQLN DKKRRLMISP  240
SSSSSGGAAV SSSVKSEEED GGNVGVISSP ETGFCQSSPS PETNIIRWLG EGNYGCESAP  300
NPLTSIAMGE GIGNTVTVAM SQPENSSIGC GGDKVGQISY FGELAAGVEA RPPPPYPFSL  360
LGGGF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hdg_A5e-26551477110Heat shock factor protein 1
5hdn_A5e-26551477110Heat shock factor protein 1
5hdn_B5e-26551477110Heat shock factor protein 1
5hdn_C5e-26551477110Heat shock factor protein 1
5hdn_D5e-26551477110Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00379DAPTransfer from AT3G24520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.16G116200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP0140111e-70KP014011.1 Populus simonii heat shock transcription factor C1 (HsfC1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021596252.10.0heat stress transcription factor C-1-like
SwissprotQ9LV524e-93HSFC1_ARATH; Heat stress transcription factor C-1
TrEMBLA0A2C9UB430.0A0A2C9UB43_MANES; Uncharacterized protein
STRINGcassava4.1_010201m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83673038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.17e-95heat shock transcription factor C1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]