PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.16G127300.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

C2H2

Protein Properties

Length: 253aa MW: 28193.3 Da PI: 6.6977

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.16G127300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.6	0.0002	83	105	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H Manes.16G127300.1.p 83 FSCNYCQRKFYSSQALGGHQNAH 105 89*****************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.19E-6	79	110	No hit	No description
PROSITE profile	PS50157	11.427	83	110	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	85	105	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence Send to blast
MDSQRKEQSL SKASPRADTQ NEQELLVEEE EEEEADPSLQ LDLKLTRSNE FHRELNLIDC 60 FNMDSINTSS ETPQTTDVEQ RVFSCNYCQR KFYSSQALGG HQNAHKRERT LAKRGRIGAF 120 GHPYLHRHYY PDMASLPLYG AYGRSLGIQA HSMIHKPCHL SFANGFANLY GHGNWSRPPI 180 DQHPAIGKLS MNHYHVNATT ATSSPGTSCS GVGRFNLEKS TIAGSPADEG IASCWLGNNQ 240 DELQKLDLSL KL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.16G127300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021598077.1	0.0	zinc finger protein 3-like
TrEMBL	A0A2C9UBG5	0.0	A0A2C9UBG5_MANES; Uncharacterized protein
STRING	cassava4.1_021303m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1439	31	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10970.1	8e-51	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Manes.16G127300.1.p