PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.16G129000.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family WRKY
Protein Properties Length: 252aa    MW: 27889.6 Da    PI: 9.1116
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.16G129000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.95.7e-30104163159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          ++Dgy+WrKYGqK+ k+++ pr+Y+rC++a gCpvkkkv+r+aed+++++ tYegeHnh+
  Manes.16G129000.1.p 104 VKDGYQWRKYGQKVTKDNPAPRAYFRCSMApGCPVKKKVQRCAEDKSFLVATYEGEHNHD 163
                          58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081126.38399165IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.8E-3099163IPR003657WRKY domain
SuperFamilySSF1182903.79E-26101164IPR003657WRKY domain
SMARTSM007741.1E-34104164IPR003657WRKY domain
PfamPF031065.9E-25105163IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MDAHFSCEVK AEALQEKLER SRKENEALRV MLEVMSSKLS VLQSRVQEKK FKVHEMGRNS  60
PFSGSGASYN EVYDPIKKQR IEIPMAKPSQ FFFRTDPKDK SPIVKDGYQW RKYGQKVTKD  120
NPAPRAYFRC SMAPGCPVKK KVQRCAEDKS FLVATYEGEH NHDPNGSPGH ILYSSPESSR  180
SSISCPVISN PFEPGVALDL TLSSAVDDKE KPSHNSNSKV EEYVASLTKD PSFTVALAAA  240
VARSLSTPGV L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-221031631372WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.16G129000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT8276240.0KT827624.1 Manihot esculenta WRKY transcription factor 49 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021597378.10.0probable WRKY transcription factor 40
TrEMBLA0A140H8Q30.0A0A140H8Q3_MANES; WRKY transcription factor 49
STRINGcassava4.1_014614m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF73983044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.13e-41WRKY DNA-binding protein 40
Publications ? help Back to Top
  1. Wei Y, et al.
    Genome-Wide Identification and Expression Analysis of the WRKY Gene Family in Cassava.
    Front Plant Sci, 2016. 7: p. 25
    [PMID:26904033]