PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.16G129500.2.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family WRKY
Protein Properties Length: 375aa    MW: 40887.5 Da    PI: 8.8307
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.16G129500.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY863.5e-273693259
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
                         +Dgy+WrKYGqK+vk+s+ +rsYYrC+ ++C++kkkv+r+++  ++++i+Y g+Hnh+
  Manes.16G129500.2.p 36 SDGYSWRKYGQKQVKSSNSSRSYYRCARSNCHAKKKVQRCDHSRRIIDIIYIGHHNHD 93
                         7********************************************************7 PP
2WRKY94.95.6e-30237294259
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          +Dgy+WrKYGqK+vkg+ + rsYYrCtsagCp++k+ver+++d ++++  Yeg+H+h+
  Manes.16G129500.2.p 237 SDGYRWRKYGQKMVKGNSYLRSYYRCTSAGCPARKHVERATDDATTTTLAYEGKHDHD 294
                          7********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.5E-262394IPR003657WRKY domain
SuperFamilySSF1182901.16E-242994IPR003657WRKY domain
PROSITE profilePS5081121.73095IPR003657WRKY domain
SMARTSM007749.8E-293594IPR003657WRKY domain
PfamPF031062.8E-223793IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.5E-31221296IPR003657WRKY domain
PROSITE profilePS5081130.986231296IPR003657WRKY domain
SuperFamilySSF1182901.15E-25232296IPR003657WRKY domain
SMARTSM007744.4E-33236295IPR003657WRKY domain
PfamPF031064.1E-24238293IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MQHSTPAIPT SGLILDQQKA EHNASLSHIV TETPASDGYS WRKYGQKQVK SSNSSRSYYR  60
CARSNCHAKK KVQRCDHSRR IIDIIYIGHH NHDISQSKCN VSSGSVPSAN IASGHHIVDS  120
IQIVAGADVS ICWEDIRQSS VHIADSEQQS SSSSSGDIRI KVEKQNGNEL DTKKFSVSSG  180
AEQQKNSSCV IADAEVQEKH GAEPRLKKRS AYSAPLLEAN KETKIVVHAA ADGGISSDGY  240
RWRKYGQKMV KGNSYLRSYY RCTSAGCPAR KHVERATDDA TTTTLAYEGK HDHDVPVPKK  300
QKGSESLGRI SSNATVNGPQ CQKTKSLSSE RISAKCSVDR EGDLMDEKVL ELGGEKALES  360
AQTLLSIGFE LRPC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-2622296174WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.16G129500.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021597465.10.0WRKY transcription factor WRKY24-like
TrEMBLA0A2C9UB730.0A0A2C9UB73_MANES; Uncharacterized protein
TrEMBLA0A2C9UCC10.0A0A2C9UCC1_MANES; Uncharacterized protein
STRINGcassava4.1_027662m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30935.11e-66WRKY DNA-binding protein 32