PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.17G009200.2.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

G2-like

Protein Properties

Length: 198aa MW: 22378.6 Da PI: 10.4423

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.17G009200.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105.2	3.7e-33	23	77	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LH+rFv+av++LGG++kAtPk++l+lm++kgLtl+h+kSHLQkYRl Manes.17G009200.2.p 23 KPRLRWTADLHHRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRL 77 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.4E-32	20	81	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.245	20	80	IPR017930	Myb domain
SuperFamily	SSF46689	2.15E-16	23	80	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.5E-24	23	78	IPR006447	Myb domain, plants
Pfam	PF00249	5.5E-9	25	76	IPR001005	SANT/Myb domain
Pfam	PF14379	5.4E-22	125	171	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 198 aa Download sequence Send to blast
MERGVLGGNY PYENGVVMSR DPKPRLRWTA DLHHRFVDAV TKLGGPDKAT PKSVLRLMGL 60 KGLTLYHLKS HLQKYRLGQQ QAKKQTAKEQ TKESGSSYVN FSNHSSAVST SSSAIEIQQG 120 PGELPVTEPL KSQMEAHKRL EEQLEVQKKL QMRIEAQGKY LQEILEKAQK SLSLDMKCNG 180 KSLGFLYQQT RRERRNQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	1e-19	23	76	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-19	23	76	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-19	23	76	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-19	23	76	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00544	DAP	Transfer from AT5G45580	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.17G009200.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021599014.1	1e-131	LOW QUALITY PROTEIN: myb family transcription factor PHL11-like
Swissprot	C0SVS4	6e-74	PHLB_ARATH; Myb family transcription factor PHL11
TrEMBL	A0A2C9U3I5	1e-143	A0A2C9U3I5_MANES; Uncharacterized protein
STRING	cassava4.1_016717m	1e-144	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45580.1	7e-60	G2-like family protein

Link Out ? help Back to Top
Phytozome	Manes.17G009200.2.p

Publications ? help Back to Top
Petridis A,Döll S,Nichelmann L,Bilger W,Mock HP Arabidopsis thaliana G2-LIKE FLAVONOID REGULATOR and BRASSINOSTEROID ENHANCED EXPRESSION1 are low-temperature regulators of flavonoid accumulation. New Phytol., 2016. 211(3): p. 912-25 [PMID:27125220]