PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.17G012700.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C2H2
Protein Properties Length: 240aa    MW: 26592.2 Da    PI: 7.1869
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.17G012700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.000127395123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         y+C+ C + F++   L  H+++H
  Manes.17G012700.1.p 73 YTCTFCRREFRSAQALGGHMNVH 95
                         9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.47E-670100No hitNo description
SMARTSM003550.00667395IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.15773100IPR007087Zinc finger, C2H2
PROSITE patternPS0002807595IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MAAELGLLSL NNFHHRKLPQ TQQNHNHQRH NSSSTSWMWN PKQTQEEDDS WEIRAFEEDT  60
GNVMGTTWPP RSYTCTFCRR EFRSAQALGG HMNVHRRDRA RLHQTVQPPG SINHPNSSST  120
STSSSTFLIP TQEFSTTNGG LCLLYQLPNP NGIFTSTMNA CAIDSPSTLL SISPYPHNHL  180
SGQSLNYPVA SPVINSSHFY SSKAESSASI DKYKDLGNEE LDLELRLGHR STSSSSSAS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A3e-136895229superman protein
2l1o_A3e-136895229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.17G012700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021599867.11e-178zinc finger protein 10
TrEMBLA0A2C9U4R21e-177A0A2C9U4R2_MANES; Uncharacterized protein
STRINGcassava4.1_023237m1e-177(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35253155
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.13e-46C2H2 family protein