PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.17G016600.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family NAC
Protein Properties Length: 356aa    MW: 40416 Da    PI: 8.2975
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.17G016600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.62.1e-52101391129
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkatg 87 
                          +ppGfrFhPtdee++++yLkkkv+ +++++ evikevd++kvePw+L++++k     ++e+yfFs++d+ky+tg+r+nrat++g+Wkatg
  Manes.17G016600.1.p  10 VPPGFRFHPTDEEMLHYYLKKKVSFQRFDM-EVIKEVDLNKVEPWELQERCKIgstPQNECYFFSHKDRKYPTGSRTNRATNAGFWKATG 98 
                          69****************************.99**************96444422245599***************************** PP

                  NAM  88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                          +dk + + + +++g++ktLvfykgrap+g+ktdW+mheyrle
  Manes.17G016600.1.p  99 RDKCIRN-SFKKIGMRKTLVFYKGRAPHGQKTDWIMHEYRLE 139
                          ******9.8899****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.42E-587162IPR003441NAC domain
PROSITE profilePS5100555.28210162IPR003441NAC domain
PfamPF023651.5E-2611138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MATASSAGGV PPGFRFHPTD EEMLHYYLKK KVSFQRFDME VIKEVDLNKV EPWELQERCK  60
IGSTPQNECY FFSHKDRKYP TGSRTNRATN AGFWKATGRD KCIRNSFKKI GMRKTLVFYK  120
GRAPHGQKTD WIMHEYRLED GDDIQGNSST EDGWVVCKVF KKKNLFKVGN GGSSSINSSK  180
HYQLNTSIIQ PRSFMQSLTN THDQQAFDFE LNKSKLGLHH HYPHTTATTS HYSPLQSQNL  240
MSTHDYSSAL GSGSGSASPM IAKQFMLNAR DCETGSENLR YPQSCDAVLQ VGTCEQPNHD  300
QQHHQGLNEW SMLDRIVTPH LGNDDSSKEV RFEDHNNASS VHSLRGEMDF WSYGK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-5041649170Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:20197506}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.17G016600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR6052270.0KR605227.1 Manihot esculenta NAC transcription factors 89 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021598201.10.0protein BEARSKIN2-like
SwissprotQ9SV871e-146BRN2_ARATH; Protein BEARSKIN2
TrEMBLA0A0M4FL100.0A0A0M4FL10_MANES; NAC transcription factors 89
STRINGcassava4.1_032497m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87523343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G10350.11e-140NAC domain containing protein 70
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Hu W, et al.
    Genome-Wide Identification and Expression Analysis of the NAC Transcription Factor Family in Cassava.
    PLoS ONE, 2015. 10(8): p. e0136993
    [PMID:26317631]
  3. Kamiya M, et al.
    Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis.
    Development, 2016. 143(21): p. 4063-4072
    [PMID:27803060]