PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.17G019500.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family ARR-B
Protein Properties Length: 551aa    MW: 61239.8 Da    PI: 5.5732
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.17G019500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like87.31.5e-27312366156
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                          k +++Wt eLH++Fv+aveqL G ++A+P++ile+mkv+gLt+++v+SHLQkYR++
  Manes.17G019500.1.p 312 KMKVDWTAELHKKFVQAVEQL-GVDQAIPSRILEVMKVEGLTRHNVASHLQKYRMH 366
                          5689*****************.********************************96 PP
2Response_reg24.41.4e-09201261109
                          EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHH CS
         Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedale 88 
                          +l+ +++ + +  l++ le  +y +v  + +  eal  + ++   +++ ++ +  ++++G   ++ ++++ ++lp i+++     + + +
  Manes.17G019500.1.p  20 ILLLEEDSNSAAELKSKLEAMDY-IVSIFCNENEALSAISNEPesFHVAIVEVGTSNSNGR--FEFLEAA-KDLPAIMISNIHCLSIMMK 105
                          68888999999999*********.***************888778***************4..4444444.49*******9999****** PP

                          HHHTTESEEEESS--HHHHHH CS
         Response_reg  89 alkaGakdflsKpfdpeelvk 109
                          ++ +Ga +fl Kp ++e+l++
  Manes.17G019500.1.p 106 CIALGAVEFLRKPLSEEKLRN 126
                          ******************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23002.1E-1516164No hitNo description
SuperFamilySSF521722.56E-1516135IPR011006CheY-like superfamily
SMARTSM004480.007818128IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011019.57519132IPR001789Signal transduction response regulator, receiver domain
PfamPF000723.1E-620127IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.62E-921131No hitNo description
PROSITE profilePS5129413.643309368IPR017930Myb domain
SuperFamilySSF466894.03E-18310369IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.6E-26311369IPR009057Homeodomain-like
TIGRFAMsTIGR015576.6E-25312366IPR006447Myb domain, plants
PfamPF002495.9E-8315364IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 551 aa     Download sequence    Send to blast
MVCTANDLSA WEDFPKGLRI LLLEEDSNSA AELKSKLEAM DYIVSIFCNE NEALSAISNE  60
PESFHVAIVE VGTSNSNGRF EFLEAAKDLP AIMISNIHCL SIMMKCIALG AVEFLRKPLS  120
EEKLRNIWQH VVRKAFNAGG NVQSESLKPV KDYVASMLQI KVETEEAKNE SLERIENGSP  180
AQENEHEQSS GSDKYPAPST PQLKQGARLL DDGDCQDHTN CSAEKESEGE SKSVENTCAM  240
TEVTLQVNHP QSLSETLIKE EDDLADCVKC ENNVSNSPQN KGNLNNPDGN AQTPDKASGL  300
HNSYGTRVIR KKMKVDWTAE LHKKFVQAVE QLGVDQAIPS RILEVMKVEG LTRHNVASHL  360
QKYRMHRRHI LPKEDDRRWS QQRSYYQHKP IMAYPPPHSN HTFQLSPVYP VWGAAAGQPP  420
GVQMWCSSPG YSPWLPSESW YWKPYPGMHA EAWGCPVMPP PQSPYSSSPQ NATVFHSDGI  480
VDNGCNGPQN SFDLHPAEEL VDNIVKEAIN KPWLPLPLGL KPPSTDSVLA ELTRQGISRL  540
PSHINFSNSM *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-15310370363ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.17G019500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021599390.10.0two-component response regulator-like APRR2 isoform X1
RefseqXP_021599391.10.0two-component response regulator-like APRR2 isoform X1
SwissprotQ6LA431e-143APRR2_ARATH; Two-component response regulator-like APRR2
TrEMBLA0A2C9U4330.0A0A2C9U433_MANES; Uncharacterized protein
STRINGcassava4.1_004905m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35663465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.61e-138ARR-B family protein
Publications ? help Back to Top
  1. Gong L, et al.
    Transcriptome Profiling of the Potato (Solanum tuberosum L.) Plant under Drought Stress and Water-Stimulus Conditions.
    PLoS ONE, 2015. 10(5): p. e0128041
    [PMID:26010543]