PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.17G030200.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

GeBP

Protein Properties

Length: 180aa MW: 20426.6 Da PI: 10.5722

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.17G030200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	81.4	1.3e-25	66	145	2	81
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfs 81 lfqrlwse+Dei++L G+idf++++g++ +d++ f++f+k+s++f+vs +ql +K+ rLKk +++++k k k +f Manes.17G030200.1.p 66 LFQRLWSEDDEILVLEGIIDFTENKGVDHAKDMNSFFDFIKSSLHFDVSLNQLKDKVLRLKKSLRNMKAKGKWVKIRHFL 145 79******************************************************************997777666665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	2.8E-20	67	137	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 180 aa Download sequence Send to blast
MEENPLKTTK HRSKSLASTQ VAVKSTAAVK RGSETDRDPK ESKRSKKKDS ESDGSVDKPE 60 DIKKQLFQRL WSEDDEILVL EGIIDFTENK GVDHAKDMNS FFDFIKSSLH FDVSLNQLKD 120 KVLRLKKSLR NMKAKGKWVK IRHFLKPIIK NLLICGKRYG AAKQLVGRSD LILKSNGKE*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.17G030200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021666793.1	3e-72	probable transcription factor At1g11510
TrEMBL	A0A2C9U4F8	1e-125	A0A2C9U4F8_MANES; Uncharacterized protein
STRING	cassava4.1_030371m	1e-126	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1831	34	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61730.1	6e-18	DNA-binding storekeeper protein-related transcriptional regulator

Link Out ? help Back to Top
Phytozome	Manes.17G030200.1.p