PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.17G030700.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family bHLH
Protein Properties Length: 235aa    MW: 26400.6 Da    PI: 8.6562
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.17G030700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.21.9e-1065110555
                          HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +  +ErrRR+++ +++  Lr+l+P       + ++Ka+i   A+ YIk+Lq
  Manes.17G030700.1.p  65 NLHAERRRRQKLGDSLLALRSLVPII-----TNMNKAAIIVDAITYIKELQ 110
                          5579*********************6.....58*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.26E-1059114No hitNo description
SuperFamilySSF474595.76E-1560123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.13260109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.3E-1364123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.4E-864110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-1066115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MTSFFITIHY WKHLFITNLD QSSPISELAG SAISELNNTR ESSRMVRLGL RTVDKDDCGE  60
YKSKNLHAER RRRQKLGDSL LALRSLVPII TNMNKAAIIV DAITYIKELQ QNVKLLSDQL  120
LEREASSEEA VLKTRSNEMN AAADEMKQFG IVEDVQVIKI YGNKLWIKII LEKKRRKITK  180
LIETVTSLGL ELIDINVSTS KGAMLVSSCV EDSYGGTRTV EQTKELLLEI IGSI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1172176KKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.17G030700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021599915.11e-169transcription factor DYT1-like
TrEMBLA0A2C9U5991e-168A0A2C9U599_MANES; Uncharacterized protein
STRINGcassava4.1_029875m1e-150(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55102948
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21330.12e-38bHLH family protein