PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.17G051700.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family ERF
Protein Properties Length: 281aa    MW: 31615.2 Da    PI: 6.7973
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.17G051700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.31e-19121171255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                          +y+GVr+++ +g+++AeIrd      k +r++lg+f+tae+Aa a+++a+++++g
  Manes.17G051700.1.p 121 HYRGVRRRP-WGKYAAEIRDS---SrKGARVWLGTFDTAEDAALAYDKAALRIRG 171
                          7********.**********3...2234*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.106.9E-32120179IPR001471AP2/ERF domain
PfamPF008472.6E-14121171IPR001471AP2/ERF domain
CDDcd000181.16E-29121179No hitNo description
PROSITE profilePS5103223.828121179IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-23121181IPR016177DNA-binding domain
SMARTSM003807.0E-38121185IPR001471AP2/ERF domain
PRINTSPR003674.8E-11122133IPR001471AP2/ERF domain
PRINTSPR003674.8E-11145161IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MENMAIQSDH YHHHLLENVW ATFINGDDGG DKRTRNTQGD PKSWEDQLPC LDGREDSMKI  60
LQRLPSLGRW MSMGAEAWEE LLAGIVPSSQ NITDSAFDYS SEKKSSKLMN NVKGERTTQR  120
HYRGVRRRPW GKYAAEIRDS SRKGARVWLG TFDTAEDAAL AYDKAALRIR GPKANLNFPF  180
ETVAKAMGVD CSSNLSSKAC NKTSENSYKF LAGSNGDNVP RHRKRVSRDW EESSTDMMRD  240
QEPALKRMAT VEESKFGNGF DVLEFQDLGS DYLDSLLSSL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-27120182466ATERF1
3gcc_A1e-27120182466ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.17G051700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021599788.10.0ethylene-responsive transcription factor ERF091-like
TrEMBLA0A2C9U5D40.0A0A2C9U5D4_MANES; Uncharacterized protein
STRINGcassava4.1_022816m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF95473142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18450.12e-30ERF family protein