PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.17G055000.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family bHLH
Protein Properties Length: 262aa    MW: 28555.5 Da    PI: 8.2723
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.17G055000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.93.2e-1276122354
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          ++h+e+ErrRR+riN  +++Lr l+P a     +K++Ka+ L ++++ +k+L
  Manes.17G055000.1.p  76 KSHSEAERRRRERINAHLATLRGLIPCA-----EKMDKATLLAEVINQVKEL 122
                          58*************************9.....8************999888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.63173122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.4E-1076122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.03E-1277124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.9E-1377124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.8E-1079128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.0017161194No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MGAYYYSSNS SSGCGYFNSL DPFSRSLDGF NGVSRGGSMV SQALVLDSEK GELVKAPATR  60
VAKKGMSEAK ALAALKSHSE AERRRRERIN AHLATLRGLI PCAEKMDKAT LLAEVINQVK  120
ELKKNAIEAS KGLLIPMDDD EVKVETHDNG AGDGTLSFKA SLCCDYRPEL LSDIRQAVDS  180
LQLKMVDAQI STLGCRLKVV TFLTCCRDKN ADEPELLTNS IHQALNFVLE KGSILPEYSP  240
RTTLQNKRRR VTFLESSSST S*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18186ERRRRE
2246250KRRRV
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.17G055000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021598395.10.0transcription factor bHLH30-like
TrEMBLA0A2C9U6390.0A0A2C9U639_MANES; Uncharacterized protein
STRINGcassava4.1_028553m1e-170(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF89863143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.14e-34bHLH family protein