PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.17G062000.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MIKC_MADS
Protein Properties Length: 242aa    MW: 27816.6 Da    PI: 9.9773
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.17G062000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.31.5e-312473150
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                         krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+
  Manes.17G062000.1.p 24 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 73
                         79***********************************************8 PP
2K-box115.74.4e-3892187499
                K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93 
                          s++ s++ea+a+++qqe+akL+ +i+nLq+++Rh+lGe+L+ L++keL++Le +Lek++++iRskKnell+++ie++qk+e +l+++n+ 
  Manes.17G062000.1.p  92 SNTGSVSEANAQYYQQEAAKLRVQISNLQNSNRHMLGESLGALTVKELKSLEIRLEKGISRIRSKKNELLFAEIEYMQKREIDLHNNNQL 181
                          444459************************************************************************************ PP

                K-box  94 Lrkkle 99 
                          Lr+k++
  Manes.17G062000.1.p 182 LRAKIA 187
                          ****97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.1E-421675IPR002100Transcription factor, MADS-box
PROSITE profilePS5006634.1321676IPR002100Transcription factor, MADS-box
CDDcd002657.53E-461793No hitNo description
SuperFamilySSF554552.62E-331789IPR002100Transcription factor, MADS-box
PROSITE patternPS0035001872IPR002100Transcription factor, MADS-box
PRINTSPR004044.3E-331838IPR002100Transcription factor, MADS-box
PfamPF003198.9E-272572IPR002100Transcription factor, MADS-box
PRINTSPR004044.3E-333853IPR002100Transcription factor, MADS-box
PRINTSPR004044.3E-335374IPR002100Transcription factor, MADS-box
PfamPF014865.4E-28100186IPR002487Transcription factor, K-box
PROSITE profilePS5129714.993102192IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0048440Biological Processcarpel development
GO:0048443Biological Processstamen development
GO:0048497Biological Processmaintenance of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MAYQSESRET SPQRKMGRGK IEIKRIENTT NRQVTFCKRR NGLLKKAYEL SVLCDAEVAL  60
IVFSSRGRLY EYANNSVKST IERYKKACAD SSNTGSVSEA NAQYYQQEAA KLRVQISNLQ  120
NSNRHMLGES LGALTVKELK SLEIRLEKGI SRIRSKKNEL LFAEIEYMQK REIDLHNNNQ  180
LLRAKIADNE RKQQNMNMMP GGGNYEIMQS QPFDNRNYFQ VNALQPTNHY PHQDQMALQL  240
V*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P3e-211684169Myocyte-specific enhancer factor 2B
1tqe_Q3e-211684169Myocyte-specific enhancer factor 2B
1tqe_R3e-211684169Myocyte-specific enhancer factor 2B
1tqe_S3e-211684169Myocyte-specific enhancer factor 2B
6c9l_A3e-211684169Myocyte-specific enhancer factor 2B
6c9l_B3e-211684169Myocyte-specific enhancer factor 2B
6c9l_C3e-211684169Myocyte-specific enhancer factor 2B
6c9l_D3e-211684169Myocyte-specific enhancer factor 2B
6c9l_E3e-211684169Myocyte-specific enhancer factor 2B
6c9l_F3e-211684169Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00609ChIP-seqTransfer from AT4G18960Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.17G062000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021599035.11e-179floral homeotic protein AGAMOUS-like
SwissprotQ408721e-140AG_PANGI; Floral homeotic protein AGAMOUS
TrEMBLA0A2C9U5J91e-178A0A2C9U5J9_MANES; Uncharacterized protein
STRINGEOY278721e-161(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68429102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.11e-122MIKC_MADS family protein