PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.17G075600.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

MYB

Protein Properties

Length: 231aa MW: 26173.4 Da PI: 9.2851

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.17G075600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.7	1.1e-17	13	60	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+++Ed++l+d+++++G g+W+t ++ g+ R++k+c++rw +yl Manes.17G075600.1.p 13 KGAWSKQEDQKLIDYIRKHGEGSWRTLPQSAGLLRCGKSCRLRWINYL 60 79****************************99**********97 PP
2	Myb_DNA-binding	52.3	1.3e-16	66	111	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++ ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l Manes.17G075600.1.p 66 RGNFAEDEEDLIIKLHALLGNR-WSLIAGRLP-GRTDNEVKNYWNSHL 111 8999****************.*****.**********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.3E-23	4	63	IPR009057	Homeodomain-like
PROSITE profile	PS51294	16.642	8	60	IPR017930	Myb domain
SuperFamily	SSF46689	5.62E-29	11	107	IPR009057	Homeodomain-like
SMART	SM00717	5.3E-13	12	62	IPR001005	SANT/Myb domain
Pfam	PF00249	5.6E-16	13	60	IPR001005	SANT/Myb domain
CDD	cd00167	1.74E-10	15	60	No hit	No description
PROSITE profile	PS51294	26.906	61	115	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	5.3E-26	64	116	IPR009057	Homeodomain-like
SMART	SM00717	1.0E-15	65	113	IPR001005	SANT/Myb domain
Pfam	PF00249	3.5E-15	66	111	IPR001005	SANT/Myb domain
CDD	cd00167	3.68E-11	68	111	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MRKPCCDKQD TNKGAWSKQE DQKLIDYIRK HGEGSWRTLP QSAGLLRCGK SCRLRWINYL 60 RPDLKRGNFA EDEEDLIIKL HALLGNRWSL IAGRLPGRTD NEVKNYWNSH LRRKLVNMGI 120 DPNNHRLNRN FPRLQNPQGS FSATSSELKS DTTKTRHDNN NNNNEQASDA ASCLEDSPIA 180 LPDLNLDLTM SIPSSRSFNI SPEAKQKITE SNLSKEPEFA ASSPTLLLFQ *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	5e-30	10	115	4	108	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.17G075600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021598749.1	1e-170	myb-related protein 308-like
Swissprot	P81393	4e-79	MYB08_ANTMA; Myb-related protein 308
TrEMBL	A0A2C9U607	1e-169	A0A2C9U607_MANES; Uncharacterized protein
STRING	cassava4.1_015395m	1e-169	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF264	34	221

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38620.1	4e-77	myb domain protein 4

Link Out ? help Back to Top
Phytozome	Manes.17G075600.1.p

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]