PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.17G084600.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family ARR-B
Protein Properties Length: 656aa    MW: 70695.8 Da    PI: 6.6488
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.17G084600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like89.62.9e-28224277155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          kpr++W+ eLH++Fv+av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQk+Rl
  Manes.17G084600.1.p 224 KPRVVWSVELHQQFVSAVNQL-GIDKAVPKRILELMNVPGLTRENVASHLQKFRL 277
                          79*******************.********************************8 PP
2Response_reg77.64.3e-26401481109
                          EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHH CS
         Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedale 88 
                          vl+vdD+ + +++++q+l++  y +v+++++++ al+ll+e++  +D++l D+ mp+mdG++ll++   e  +lp+i++++ g  + + +
  Manes.17G084600.1.p  40 VLVVDDDATCLRIVEQMLRRCLY-HVTTCSQAKVALNLLRERKgcFDVVLSDVHMPDMDGYKLLEHVGLEM-DLPVIMMSSDGRTSAVMR 127
                          89*********************.*******************************************6644.8***************** PP

                          HHHTTESEEEESS--HHHHHH CS
         Response_reg  89 alkaGakdflsKpfdpeelvk 109
                           ++ Ga d+l Kp+ +eel +
  Manes.17G084600.1.p 128 GIRHGACDYLIKPIREEELKN 148
                          ******************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363927.9E-16617632IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23001.4E-4237173No hitNo description
SuperFamilySSF521721.42E-3537167IPR011006CheY-like superfamily
SMARTSM004484.4E-3038150IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.28339154IPR001789Signal transduction response regulator, receiver domain
PfamPF000726.6E-2340148IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.95E-2741153No hitNo description
Gene3DG3DSA:1.10.10.606.2E-30221282IPR009057Homeodomain-like
SuperFamilySSF466891.34E-19221281IPR009057Homeodomain-like
PROSITE profilePS5129411.209221280IPR017930Myb domain
TIGRFAMsTIGR015572.4E-24224277IPR006447Myb domain, plants
PfamPF002499.4E-7226275IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 656 aa     Download sequence    Send to blast
MAALQRVALS ATASDYGSCK GGGAAADAVV SDQFPVGLRV LVVDDDATCL RIVEQMLRRC  60
LYHVTTCSQA KVALNLLRER KGCFDVVLSD VHMPDMDGYK LLEHVGLEMD LPVIMMSSDG  120
RTSAVMRGIR HGACDYLIKP IREEELKNIW QHVVRKKWHE NKELEHSGTL EDNDRNKRGN  180
DDAEYASSIN EGAEGVLKVQ KKRSNSKDED DGEPENDDPS TSKKPRVVWS VELHQQFVSA  240
VNQLGIDKAV PKRILELMNV PGLTRENVAS HLQKFRLYLK RLSGVAQQGG VSNAFCGPLD  300
SNVKLNSLGR FDIQALAASG QIPPQTLAAL HAELFGRPAG SLVTTLDQPA LLQAPMQGSK  360
CIPVEHGVAF GQPLGKCQSN ISKAFPQNMV SVEHVASGFG AWTCNTNLAG MTTQNGSMLM  420
DILHQQQKHQ QQPQQQSLSE PSRSINVQPS CLVVPSQSSA SFQAGNSPAS VNQNCNFTRK  480
TLVDYSLLSS QSNNSSLNIG QTPDGNLKTT VVVGYAAPGS ISPSASSSSV NADSGITHQV  540
QTSAITFGAT RHLPGLASNI CDVQGTYGAK SAEVLDQGPL RNLGFVGKGT CLPSRFAVEE  600
FEAPSNNLNH GKIYVENSGS KVKQEPNTEY SDIARIGIPV LEQLPPNDLM SVFTE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-22220283164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.17G084600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021599432.10.0two-component response regulator ORR21
SwissprotA2XE311e-162ORR21_ORYSI; Two-component response regulator ORR21
SwissprotQ8H7S71e-162ORR21_ORYSJ; Two-component response regulator ORR21
TrEMBLA0A2C9U6820.0A0A2C9U682_MANES; Two-component response regulator
STRINGcassava4.1_003239m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118082433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-121response regulator 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]