PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.17G089800.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family ZF-HD
Protein Properties Length: 175aa    MW: 19946.7 Da    PI: 10.1326
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.17G089800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer61.41.9e-19454457
          ZF-HD_dimer  4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57
                           YkeC++Nh a+ G+++vDGCgEf+++   + t+a+  CaACgC + +HRr +
  Manes.17G089800.1.p  4 GIYKECMRNHSAKPGTYTVDGCGEFCSH---QITSAGDYCAACGCAKYWHRRIT 54
                         57************************98...55789****************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257748.0E-9552IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047702.6E-14552IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152317.49653IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.605.8E-1779150IPR009057Homeodomain-like
SuperFamilySSF466892.96E-1082150IPR009057Homeodomain-like
TIGRFAMsTIGR015651.4E-1990148IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MDRGIYKECM RNHSAKPGTY TVDGCGEFCS HQITSAGDYC AACGCAKYWH RRITLEHLEA  60
PADDTKQVSE EAKKPKLKKV QDQESRFGER KRRKSKFTQF QIEIMKSFAE DLGWTLKHKD  120
RQVHITRFCS RIHVSRSAFK NWVNNNKNRY ASATSSAKSA TKLSPTLLKA DLPN*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00143DAPTransfer from AT1G14687Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.17G089800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021598912.11e-130zinc-finger homeodomain protein 14-like
TrEMBLA0A2C9U7601e-129A0A2C9U760_MANES; Uncharacterized protein
STRINGcassava4.1_029279m1e-130(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF79822844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14687.12e-31homeobox protein 32