PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.17G089900.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family BBR-BPC
Protein Properties Length: 281aa    MW: 30974.5 Da    PI: 10.2418
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.17G089900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind352.87.3e-10812801301
            GAGA_bind   1 mdddgsrernkgyyepaaslkenlglqlmssiaerdaki....rernlalsekkaavaerd.........maflqrdkalaernkalver 77 
                          mddd+ + rn+gyyep+  +k +lglqlmss+a+rd+k     r+ n  + + ++a+++rd         m++  rd+++++        
  Manes.17G089900.1.p   1 MDDDALNMRNWGYYEPT--FKGHLGLQLMSSMADRDTKHflsgRDPNNIVVGANGAFHPRDcvvsdapvpMNY-VRDSWISQ-------- 79 
                          9***9999*******99..************************999999************************.9*******........ PP

            GAGA_bind  78 dnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkk 167
                          ++k+l++l+ +        +g+ vl++t+ ++s+q      l+++ +  r+e+      ie +++++ke+++ kkrq +  pk++kakk+
  Manes.17G089900.1.p  80 REKFLNMLPPN--------PGYAVLPETSGAHSMQV-----LQPPNTS-RDEK--VGGRIE-EPSVNKESSQLKKRQGGGAPKTPKAKKP 152
                          789****9944........5799************9.....5544444.3333..233444.4777888888899999999999999999 PP

            GAGA_bind 168 kkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiag 257
                          +k    +k++++++   +r+k  kks+d+v+ng+++D+s++P+PvCsCtG+++qCY+WG+GGWqSaCCtt++S+yPLP+stkrrgaRiag
  Manes.17G089900.1.p 153 RK----PKDNSNNAV--QRVKPAKKSMDVVINGIDMDISGIPIPVCSCTGTPQQCYRWGCGGWQSACCTTNVSMYPLPMSTKRRGARIAG 236
                          99....333344444..689********************************************************************** PP

            GAGA_bind 258 rKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                          rKmSqgafkk+LekLaaeGy+++np+DL++hWAkHGtnkfvtir
  Manes.17G089900.1.p 237 RKMSQGAFKKVLEKLAAEGYNFANPIDLRTHWAKHGTNKFVTIR 280
                          *******************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062172.3E-1171280IPR010409GAGA-binding transcriptional activator
SMARTSM012261.2E-1821280IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0050793Biological Processregulation of developmental process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MDDDALNMRN WGYYEPTFKG HLGLQLMSSM ADRDTKHFLS GRDPNNIVVG ANGAFHPRDC  60
VVSDAPVPMN YVRDSWISQR EKFLNMLPPN PGYAVLPETS GAHSMQVLQP PNTSRDEKVG  120
GRIEEPSVNK ESSQLKKRQG GGAPKTPKAK KPRKPKDNSN NAVQRVKPAK KSMDVVINGI  180
DMDISGIPIP VCSCTGTPQQ CYRWGCGGWQ SACCTTNVSM YPLPMSTKRR GARIAGRKMS  240
QGAFKKVLEK LAAEGYNFAN PIDLRTHWAK HGTNKFVTIR *
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00253DAPTransfer from AT2G01930Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.17G089900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021600054.10.0protein BASIC PENTACYSTEINE2-like
SwissprotQ9SKD01e-112BPC1_ARATH; Protein BASIC PENTACYSTEINE1
TrEMBLA0A2C9U6050.0A0A2C9U605_MANES; Uncharacterized protein
STRINGcassava4.1_034371m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23703283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01930.21e-107basic pentacysteine1