PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.17G092600.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

Trihelix

Protein Properties

Length: 313aa MW: 35723.1 Da PI: 8.8616

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.17G092600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	61.1	2.6e-19	43	131	2	86
trihelix 2 WtkqevlaLiearremeerlrr......gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 Wt qe+l+Li+a++ ++er ++ +k + +W++v ++++++g+ rs++qC++kw+nl ++ykk++e +++ ++s + p + + Manes.17G092600.1.p 43 WTIQETLTLITAKKLDDERRSKpsipstSKPGELRWKWVENYCWAHGCFRSQNQCNDKWDNLLRDYKKVREYQSRS--NASDSSPSYWTM 130 ************88888885333333678899*************************************995..555567888888 PP trihelix 86 e 86 + Manes.17G092600.1.p 131 D 131 7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.248	35	105	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	5.9E-5	35	107	IPR009057	Homeodomain-like
Pfam	PF13837	5.5E-15	42	132	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence Send to blast
MSQPPTPIPQ TLPPIPPPLP PPQPQLQPPA LLPANREYRK GNWTIQETLT LITAKKLDDE 60 RRSKPSIPST SKPGELRWKW VENYCWAHGC FRSQNQCNDK WDNLLRDYKK VREYQSRSNA 120 SDSSPSYWTM DRQQRKFYNL PSNMSPDVFE ALNEVVQRRY HNIPQSLPPS QQQHQHQQQE 180 QQQQLSVAVA ASPPPETTRE SLPEPVMDLP AVSEGSESSA TESSDKLDTG TKRRKVRNIG 240 ASIKHSASIL AQTIRNCEEK KDKRHQEMME IEQRRLQLEE ARNEVNREGM ANLAMAVTKL 300 STAIQSLISD QT*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.17G092600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021599061.1	0.0	trihelix transcription factor ASR3-like
TrEMBL	A0A2C9U6B6	0.0	A0A2C9U6B6_MANES; Uncharacterized protein
STRING	cassava4.1_022367m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6804	32	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	6e-49	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Manes.17G092600.1.p