PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.17G113200.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB
Protein Properties Length: 199aa    MW: 22916.8 Da    PI: 6.3612
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.17G113200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.45.9e-171562148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT eEd +l+++++ +G g W++ a+  g++Rt+k+c++rw++yl
  Manes.17G113200.1.p 15 KGPWTMEEDMILINYIANHGEGAWNSLAKAAGLKRTGKSCRLRWLNYL 62
                         79********************************************97 PP
2Myb_DNA-binding54.62.4e-1768111146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          rg+ T+eE++l+ ++++++G++ W++Ia++++ gRt++++k++w++
  Manes.17G113200.1.p  68 RGNITPEEQLLIMELHAKWGNR-WSKIAKHLP-GRTDNEIKNFWRT 111
                          7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.5E-24865IPR009057Homeodomain-like
PROSITE profilePS5129415.3741062IPR017930Myb domain
SuperFamilySSF466892.58E-3113109IPR009057Homeodomain-like
SMARTSM007175.1E-131464IPR001005SANT/Myb domain
PfamPF002498.1E-161562IPR001005SANT/Myb domain
CDDcd001671.31E-91762No hitNo description
PROSITE profilePS5129425.31663117IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.7E-2566117IPR009057Homeodomain-like
SMARTSM007173.4E-1567115IPR001005SANT/Myb domain
PfamPF002493.0E-1668111IPR001005SANT/Myb domain
CDDcd001671.17E-1172111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0080086Biological Processstamen filament development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MDKKPCISEE AEVRKGPWTM EEDMILINYI ANHGEGAWNS LAKAAGLKRT GKSCRLRWLN  60
YLRPDVRRGN ITPEEQLLIM ELHAKWGNRW SKIAKHLPGR TDNEIKNFWR TRIQKHIKQE  120
EAFSGQSSCE INEHPSTSLQ ASAMMETYSP SSYQESTMEA FPAETLAPDQ STDNYWSMED  180
LWSMQLFNGD YLINSRVN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-261211724128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.17G113200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ4970536e-99FJ497053.1 Populus x canadensis MYBF1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021598931.11e-148myb-related protein 305-like
SwissprotP813911e-91MYB05_ANTMA; Myb-related protein 305
TrEMBLA0A2C9U7Z41e-147A0A2C9U7Z4_MANES; Uncharacterized protein
STRINGevm.model.supercontig_186.71e-108(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33053469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27810.15e-92myb domain protein 21
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]