PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.17G122400.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family HD-ZIP
Protein Properties Length: 281aa    MW: 31862.1 Da    PI: 4.2274
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.17G122400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.61.4e-2067120356
                          --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          k++++t+eq++ Le+ Fe ++++  +++++LAkklgL+ rqV vWFqNrRa++k
  Manes.17G122400.1.p  67 KKRRLTQEQVDLLEKSFEAENKLEPDRKTQLAKKLGLQPRQVAVWFQNRRARWK 120
                          5678*************************************************9 PP
2HD-ZIP_I/II129.11.9e-4166157192
          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                          ekkrrl++eqv lLE+sFe+e+kLep+rK++la++LglqprqvavWFqnrRAR+ktkqlE+dy+ Lk++yd+l ++ ++  k++e+L++e
  Manes.17G122400.1.p  66 EKKRRLTQEQVDLLEKSFEAENKLEPDRKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDLLKASYDSLLSDYDAAVKQNERLKSE 155
                          69*************************************************************************************998 PP

          HD-ZIP_I/II  91 lk 92 
                          + 
  Manes.17G122400.1.p 156 VV 157
                          86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.67E-1955124IPR009057Homeodomain-like
PROSITE profilePS5007117.84862122IPR001356Homeobox domain
SMARTSM003892.2E-1965126IPR001356Homeobox domain
CDDcd000862.65E-1867123No hitNo description
PfamPF000461.0E-1767120IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.2E-2168129IPR009057Homeodomain-like
PRINTSPR000314.2E-693102IPR000047Helix-turn-helix motif
PROSITE patternPS00027097120IPR017970Homeobox, conserved site
PRINTSPR000314.2E-6102118IPR000047Helix-turn-helix motif
PfamPF021839.9E-18122163IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001558Biological Processregulation of cell growth
GO:0009637Biological Processresponse to blue light
GO:0009651Biological Processresponse to salt stress
GO:0009965Biological Processleaf morphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MESGRLFFNP SGCSGNMLFL GNLDPVFRGP RSSMLNLEDT SRKRPFFMSS PEDLFDEEYY  60
EEQLPEKKRR LTQEQVDLLE KSFEAENKLE PDRKTQLAKK LGLQPRQVAV WFQNRRARWK  120
TKQLERDYDL LKASYDSLLS DYDAAVKQNE RLKSEVVSLT EKLEAKDMTG EPQQKSDSLT  180
ADIASGFSPQ MGVKAEDHLS SGSTRSAVVD EGSPQLLDSE DSFFENNNCG ECIIGGPVDF  240
LQSEEDDGGS DDGRSYFSDV FVTAGEQQED EQPLEWWVWS *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1114122RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00323DAPTransfer from AT3G01470Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.17G122400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021598423.10.0homeobox-leucine zipper protein HAT5
SwissprotQ022831e-90HAT5_ARATH; Homeobox-leucine zipper protein HAT5
TrEMBLA0A2C9U7250.0A0A2C9U725_MANES; Uncharacterized protein
STRINGcassava4.1_013480m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF112833039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.12e-91homeobox 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Arce AL,Chan RL
    A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype.
    Plant Physiol., 2017. 175(3): p. 1238-1253
    [PMID:28956754]