PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.18G002500.2.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

NAC

Protein Properties

Length: 249aa MW: 27951.7 Da PI: 6.8867

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.18G002500.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	39.2	2.1e-12	1	27	102	128
NAM 102 lkktLvfykgrapkgektdWvmheyrl 128 +kktLvfykgrap+gekt+Wvmheyrl Manes.18G002500.2.p 1 MKKTLVFYKGRAPRGEKTKWVMHEYRL 27 8************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.53E-16	1	49	IPR003441	NAC domain
PROSITE profile	PS51005	22.315	1	49	IPR003441	NAC domain
Pfam	PF02365	5.8E-5	1	27	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
MKKTLVFYKG RAPRGEKTKW VMHEYRLDGD FSYRHTCKEE WVICRIFHKT GEKKNGLVHG 60 QGFVLEVSSP PISCSLPPLL EAPSTLVKCQ DQAPTEVLQN HFLIHHQEAS ITKNTRETNK 120 NVHTDTNTNG ASPSMLFKSP VSHQDCTLKE QSNIPKQCKT EANFSYFQLP DPNSNMNWVD 180 KVHPSPCIQY PLSCEMDCNV LGISAAATDS DITAYEMSTS IAFNGAGFQM MMLDTPIRHP 240 AESWQLDS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.18G002500.2.p

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KR605188	0.0	KR605188.1 Manihot esculenta NAC transcription factors 50 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021600114.1	0.0	NAC domain-containing protein 79-like isoform X2
TrEMBL	A0A2C9U0R1	0.0	A0A2C9U0R1_MANES; Uncharacterized protein
STRING	cassava4.1_023225m	1e-180	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76420.1	1e-30	NAC family protein

Link Out ? help Back to Top
Phytozome	Manes.18G002500.2.p

Publications ? help Back to Top
Hu W, et al. Genome-Wide Identification and Expression Analysis of the NAC Transcription Factor Family in Cassava. PLoS ONE, 2015. 10(8): p. e0136993 [PMID:26317631]