PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.18G004300.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family Nin-like
Protein Properties Length: 934aa    MW: 103810 Da    PI: 6.4048
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.18G004300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK92.53.1e-29613663252
               RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                          ek+i+l++l++yF++++kdAAk++gvc+T+LKriCRq+GIkRWP+Rkik++
  Manes.18G004300.1.p 613 EKTITLQVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGIKRWPSRKIKKV 663
                          799**********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.45602683IPR003035RWP-RK domain
PfamPF020422.7E-25615663IPR003035RWP-RK domain
SMARTSM006669.0E-28836919IPR000270PB1 domain
PROSITE profilePS5174526.775836919IPR000270PB1 domain
SuperFamilySSF542775.89E-24837920No hitNo description
CDDcd064073.38E-40838917No hitNo description
PfamPF005641.4E-19838917IPR000270PB1 domain
Gene3DG3DSA:3.10.20.2407.0E-24838916No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 934 aa     Download sequence    Send to blast
MEDHILSPGT MLLGAHADST MDFDYMDKLL LEGFRLESID GSEFFNPSSS SSAACVDSSF  60
LWPASEISNG NFASSRSNQE DEHILLPRIA PPNEAHGRSL VTAQAHGEDI GSAYRLGDNT  120
VDGSEVSRRW WIGPRTSPGS KTSVRDRLIR ALGYIKDFTK DNNILIQIWV PVDKGGRRVL  180
TTHDQCFALV PNCQRLANYR HVSINYQFLA EEDSKHMVGL PGRVFLGKVP EWTPDVRFFR  240
SDEYPRVHDA QLCDVRGTLA LPVFEQGSRT CLGVIEVVMT KQKIKYHPEL ERICKALEAV  300
NLQSSEVPSL QHVKACDTSY QAVLPEIHEV LKSACETHKL PLAQTWVPCI QQGKGGSRHS  360
DENYYRCVST VDHACYVRDS GVQAFQEACS EHHLLKGQGV AGEAFLTNQP CFTSDLTSYG  420
KTEYPLSHHA RMFGLHAAVA IRLRSVHTGT ADFVLEFFLP ADCKDPEEQK KMLTSLSIII  480
QEVCQSLRVV TDKELEEEND LPISEVLALS YGTPPDEEMF RVTQPYSESY HGDNLSWSDS  540
FPGIQQSGSA VSSFQIEKQK LLIHEKSVDC RQTQEDYSPK VSVEYGGDSA IAEGSFSSVC  600
VSKTGEKRRT KGEKTITLQV LRQYFAGSLK DAAKSIGVCP TTLKRICRQH GIKRWPSRKI  660
KKVGHSLRKL QVVIDSVQGA SGAFQIDSFY TKFPELASPN LSRSTPLSTS KQLGHPESSS  720
IQPEGGIFSS QVAAPKSPSS SSSQSSSSSH CCSSGTEQHA STLTIPTCKD LMLGENSGNC  780
VLKGVKSDAE LHVSIQEEQN LLPRSQSQKS LWEQPNLGNL PPLAKSSNRI CQEIDGQRVK  840
VTYGNEKIRF RMPNNWELKD LLQEIARRFN IDDIHKYDLK YLDDDSEWVL LTCDDDLEEC  900
IDLCQSSQSH TIKLLLQISP HLLDRSTNSR GLS*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.18G004300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021601146.10.0protein NLP4-like
SwissprotQ9LE380.0NLP4_ARATH; Protein NLP4
TrEMBLA0A2C9TZ910.0A0A2C9TZ91_MANES; Uncharacterized protein
STRINGcassava4.1_001188m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12373399
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G20640.20.0Nin-like family protein