PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.18G019100.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family ERF
Protein Properties Length: 232aa    MW: 25105.1 Da    PI: 5.085
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.18G019100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.58e-193584255
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                          ykGVr++  +g+WvAeIr+p   + r +r +lg+f+t  eAa a++aa++kl+g
  Manes.18G019100.1.p 35 TYKGVRQRT-WGKWVAEIREP---N-RgARLWLGTFDTSHEAAVAYDAAARKLYG 84
                         69****999.**********8...3.35*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.72E-223494No hitNo description
Gene3DG3DSA:3.30.730.101.3E-303593IPR001471AP2/ERF domain
PfamPF008473.0E-133584IPR001471AP2/ERF domain
PROSITE profilePS5103222.3263592IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-213592IPR016177DNA-binding domain
SMARTSM003805.7E-363598IPR001471AP2/ERF domain
PRINTSPR003671.1E-93647IPR001471AP2/ERF domain
PRINTSPR003671.1E-95874IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MGPLGEKKQL RKPAQASSRK GCMRGKGGPE NALCTYKGVR QRTWGKWVAE IREPNRGARL  60
WLGTFDTSHE AAVAYDAAAR KLYGPEAKLN LPELPLKNNQ FSAPSGNTQV SQIQMGNESQ  120
VLHNSGATCS SSSSTLMKPS EMNHDSITPL SNENVASNSK VAENEGNLGQ NQEGTDELWA  180
NLNVNLPLFD DSIWAEAAMS IDFPAMDDPG IFTGNLMDGT GWDAMQTPWC M*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-173692360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00240DAPTransfer from AT1G75490Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.18G019100.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021600099.11e-173dehydration-responsive element-binding protein 2D-like
SwissprotQ9LQZ29e-55DRE2D_ARATH; Dehydration-responsive element-binding protein 2D
TrEMBLA0A2C9U1B81e-171A0A2C9U1B8_MANES; Uncharacterized protein
STRINGcassava4.1_029526m1e-172(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25623380
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.11e-48ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]