PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.18G024300.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB_related
Protein Properties Length: 92aa    MW: 10518.8 Da    PI: 8.8593
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.18G024300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding292.5e-09650345
                         SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                         +WT+   +l+ +a + + ++   +W+  ar +g g+t +++k ++ 
  Manes.18G024300.1.p  6 SWTPKQNKLFENALAIYDKDtpdRWHNLARAVG-GKTVEEVKRHYE 50
                         7********************************.**********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.477257IPR017884SANT domain
SMARTSM007174.8E-8355IPR001005SANT/Myb domain
SuperFamilySSF466899.36E-13560IPR009057Homeodomain-like
CDDcd001671.20E-6653No hitNo description
Gene3DG3DSA:1.10.10.602.2E-4659IPR009057Homeodomain-like
PfamPF002492.9E-6650IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 92 aa     Download sequence    Send to blast
MASGSSWTPK QNKLFENALA IYDKDTPDRW HNLARAVGGK TVEEVKRHYE LLVEDVRQIE  60
AGQVPLPNYR KTGETYNNYA DEERRLKGLK L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-35291692RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.18G024300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021601829.11e-62protein RADIALIS-like 3
SwissprotQ1A1735e-36RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A2C9U0013e-61A0A2C9U001_MANES; Uncharacterized protein
STRINGcassava4.1_028103m5e-62(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.22e-38RAD-like 6