PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.18G039500.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family bHLH
Protein Properties Length: 248aa    MW: 27336.3 Da    PI: 6.7909
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.18G039500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.42.5e-133683455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                          h   Er RR+++++ f  L  llP++      K +K++i+ +A++YIk+Lq
  Manes.18G039500.1.p 36 VHILTERERRKKMRNMFTSLHALLPQL----PAKADKSTIVDEAIKYIKNLQ 83
                         58899*********************6....39******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.05E-143187No hitNo description
PROSITE profilePS5088814.433282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-1634103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.7E-163595IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-103683IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.3E-113888IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550217.08E-5165216No hitNo description
PROSITE profilePS516718.65170247IPR002912ACT domain
Gene3DG3DSA:3.30.70.2605.3E-4170241No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
METPDAQLGQ KRNRKGVAKD GETVNSVGGA ESEHEVHILT ERERRKKMRN MFTSLHALLP  60
QLPAKADKST IVDEAIKYIK NLQETLQTLQ HQSQEKLQGV TIVDSEPSVI TSHTEALESR  120
EAFMALQGSS KSFTMATNMP LSFPVSLPPS CFQTWFSPNV VMNMCGGDAQ ISVCSLKRPG  180
LLTSIFYILE KHKLDVVSAH ISSDQFRSIY MIHVHAGGVS GQYPEALSVE DTFKLAAGEM  240
NLWLLSC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.18G039500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021601623.10.0transcription factor bHLH95-like
TrEMBLA0A2C9U0E40.0A0A2C9U0E4_MANES; Uncharacterized protein
STRINGcassava4.1_028789m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47733358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.11e-46bHLH family protein