PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.18G039600.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family bHLH
Protein Properties Length: 205aa    MW: 22139.6 Da    PI: 6.5106
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.18G039600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH512.7e-16149195455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           hn  E+rRR+riN+++  L+ l+P++      K +Ka++L +A+eY+k+Lq
  Manes.18G039600.1.p 149 VHNLSEKRRRSRINEKMKALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 195
                          6*************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-19142201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.8E-19142200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.86145194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.00E-18148199No hitNo description
PfamPF000109.1E-14149195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.5E-18151200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MADLYGTAPS PAPEPEEISS FLHQLLHHSS SSSPSAKFMH HALSSPSPPL PAPAPAQTKP  60
PAELLFGHSQ DCRADGGNSC INFSDPGGYF AKESAENAVS SVISKRGVSE ENDLGGLSCD  120
SEKGADVSEV PSETVRPRSS SKRSRAAEVH NLSEKRRRSR INEKMKALQN LIPNSNKTDK  180
ASMLDEAIEY LKQLQLQVQE FYHL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.18G039600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021600505.11e-142transcription factor SPATULA-like isoform X1
TrEMBLA0A2C9U0E01e-147A0A2C9U0E0_MANES; Uncharacterized protein
STRINGcassava4.1_012226m1e-141(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22763379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.14e-29bHLH family protein