PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.18G041000.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family WRKY
Protein Properties Length: 359aa    MW: 39239.1 Da    PI: 10.0525
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.18G041000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.32.3e-31282340259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          +D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp ++++tYeg+Hnh+
  Manes.18G041000.1.p 282 HDDYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERAVDDPMMLIVTYEGDHNHS 340
                          69************************9988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105333.3E-18234279IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.805.4E-33270340IPR003657WRKY domain
PROSITE profilePS5081130.618276342IPR003657WRKY domain
SuperFamilySSF1182901.44E-26279340IPR003657WRKY domain
SMARTSM007745.8E-38281341IPR003657WRKY domain
PfamPF031067.6E-27283339IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MAVELMMGFS GDSFAAKMEE LAVREAATAG IQNVEEVIKM LKQNQLQQPQ YYPDFTSSPT  60
NNPPGTDNIM AVTDAAVNSF KKVISLLGRT TRTGHARFRR APVSPASANQ EQQQQAQDLG  120
ASVRPISSHP TEPVSAFRVY QPTPVHRLPP LPNSHHQQQK TPSLVAKNGF SERNEMRSIN  180
FSNSPSISAS TSFMSSLTGE TDSVKRSMSS GFQFAEPSHV SSAGKPPLSS SSLKRKCNSM  240
DDAALKCGST SGRCHCSKKR KSRVKRVIRV PAISNKLADI PHDDYSWRKY GQKPIKGSPH  300
PRGYYKCSSM RGCPARKHVE RAVDDPMMLI VTYEGDHNHS NSINDNDAPA AVQVHESS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-21269339271WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.18G041000.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT8276190.0KT827619.1 Manihot esculenta WRKY transcription factor 44 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021600217.10.0probable WRKY transcription factor 7
SwissprotQ9STX01e-113WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLA0A140H8P80.0A0A140H8P8_MANES; WRKY transcription factor 44
STRINGcassava4.1_010539m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21773486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.11e-88WRKY DNA-binding protein 7
Publications ? help Back to Top
  1. Wei Y, et al.
    Genome-Wide Identification and Expression Analysis of the WRKY Gene Family in Cassava.
    Front Plant Sci, 2016. 7: p. 25
    [PMID:26904033]