PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.18G045200.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family LBD
Protein Properties Length: 211aa    MW: 22813.9 Da    PI: 7.9754
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.18G045200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26097.51.4e-302103197
               DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 
                          +C++C+vlr++C++ C+l+ ++     p++q +++ +++k+FG+s +++l++a+pe++r+++++sl++eA+ r+ +Pv+Gavg+++++++
  Manes.18G045200.1.p   2 SCNGCRVLRKGCSETCILRSCLhwissPEAQGNATLFLAKFFGRSDLMSLISAVPESQRPALFQSLLFEACGRTVNPVNGAVGLLWSGNW 91 
                          6***************************************************************************************** PP

               DUF260  86 qleqlkaelall 97 
                          +++q+++e++l 
  Manes.18G045200.1.p  92 HVCQAAVETVLS 103
                          ******998875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089118.6361107IPR004883Lateral organ boundaries, LOB
PfamPF031956.4E-262101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSETCILR SCLHWISSPE AQGNATLFLA KFFGRSDLMS LISAVPESQR  60
PALFQSLLFE ACGRTVNPVN GAVGLLWSGN WHVCQAAVET VLSGGTLRPI PGILTGFIAP  120
NYDESSDSFS AEACKLRNMW TQSKPYGPIA RENQASDLNL SLTSKLVAAG RTGREKRGRD  180
AMSFYTEESS ETTTFESNGS DSKKLLNLFV *
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.18G045200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021600875.11e-154LOB domain-containing protein 38-like
SwissprotQ9SN234e-71LBD38_ARATH; LOB domain-containing protein 38
TrEMBLA0A2C9U0K71e-153A0A2C9U0K7_MANES; Uncharacterized protein
STRINGcassava4.1_016184m1e-154(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72134136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.13e-70LOB domain-containing protein 38