PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.18G051600.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family HD-ZIP
Protein Properties Length: 265aa    MW: 29496.3 Da    PI: 8.1043
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.18G051600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.21.4e-18119173256
                          T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          rk+ +++k+q  +Le+ F+++++++ ++++ LA++l+L  rqV vWFqNrRa+ k
  Manes.18G051600.1.p 119 RKKLRLNKQQSATLENSFKEHSTLNPKQKQALAEQLNLRPRQVEVWFQNRRARTK 173
                          788899***********************************************98 PP
2HD-ZIP_I/II122.22.6e-39119207190
          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                          +kk+rl+k+q+++LE+sF+e+++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l+een+rL+ke +eL+ +
  Manes.18G051600.1.p 119 RKKLRLNKQQSATLENSFKEHSTLNPKQKQALAEQLNLRPRQVEVWFQNRRARTKLKQTEVDCEVLKKCCETLTEENKRLQKELQELK-S 207
                          69*************************************************************************************9.4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.167115175IPR001356Homeobox domain
SuperFamilySSF466895.99E-18117183IPR009057Homeodomain-like
SMARTSM003897.3E-16117179IPR001356Homeobox domain
CDDcd000867.14E-16118176No hitNo description
Gene3DG3DSA:1.10.10.601.9E-17119173IPR009057Homeodomain-like
PfamPF000465.0E-16119173IPR001356Homeobox domain
PROSITE patternPS000270150173IPR017970Homeobox, conserved site
SMARTSM003401.0E-21175218IPR003106Leucine zipper, homeobox-associated
PfamPF021835.8E-10175208IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MGFGISDGVC NTGLGLALSC HDKQQHCSQS DHHLQQKKQK LSLKYDHMFP SLTLGLPQEP  60
YPSAAKVEAD FQPQASSPSA VSSFSNSSVK KEREFCGEEA EVERVSSRVS DEDEEGSPRK  120
KLRLNKQQSA TLENSFKEHS TLNPKQKQAL AEQLNLRPRQ VEVWFQNRRA RTKLKQTEVD  180
CEVLKKCCET LTEENKRLQK ELQELKSLKL TAPLYMQLPA ATLTICPSCE RINSGDASST  240
TTTTLTVGPK PHFYSPFTHP SAAC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1167175RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.18G051600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021601362.10.0homeobox-leucine zipper protein HAT22-like isoform X1
RefseqXP_021601363.10.0homeobox-leucine zipper protein HAT22-like isoform X2
SwissprotP466044e-85HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLA0A2C9U0S60.0A0A2C9U0S6_MANES; Uncharacterized protein
STRINGcassava4.1_014073m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF114433107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.16e-59HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]