PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.18G056400.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family GATA
Protein Properties Length: 308aa    MW: 33558.4 Da    PI: 5.8163
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.18G056400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA498.5e-16207243135
                 GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          C++Cg+ +  Tp +Rrgp g++tLCnaCGl+++ kg+
  Manes.18G056400.1.p 207 CQHCGVNEnnTPAMRRGPAGPRTLCNACGLMWANKGT 243
                          *******999************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009794.2E-767102IPR010399Tify domain
PROSITE profilePS5132012.94267102IPR010399Tify domain
PfamPF062002.9E-1070101IPR010399Tify domain
PROSITE profilePS5101712.65135177IPR010402CCT domain
PfamPF062038.0E-15135176IPR010402CCT domain
SMARTSM004014.3E-9201254IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.3E-14205247IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577165.7E-11205250No hitNo description
CDDcd002025.66E-16206250No hitNo description
PfamPF003201.5E-13207243IPR000679Zinc finger, GATA-type
PROSITE patternPS003440207234IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MAAGNPQPLQ ARLYEAHLRA PIQIEEDDGG EYEDGEAMDD VEEAHMNSGV NVADHNDGVG  60
GGAGVVMASR TSELTLSFEG EVYVFPAVTP EKVQAVLLLL GGRDIPTAVP TFEVSYDQNN  120
KGVADTPKHS NLSRRIASLV RFREKRKERC FDKKIRYTVR KEVAQRMHRK NGQFASLKES  180
SGGSSWESTK SHLQDSAPCP ETFIRRCQHC GVNENNTPAM RRGPAGPRTL CNACGLMWAN  240
KGTLRDLHKG GRNVPLDQIE HETPVDVKPS IMEGEVSDNQ DEHGTPEDTS KVVSEGSTNP  300
SANPVVV*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.18G056400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021601389.10.0GATA transcription factor 24-like
SwissprotQ8GXL73e-70GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A2C9U1P70.0A0A2C9U1P7_MANES; Uncharacterized protein
STRINGcassava4.1_012471m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33193364
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.24e-67ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]