PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.18G059400.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family bHLH
Protein Properties Length: 249aa    MW: 27081.5 Da    PI: 7.9803
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.18G059400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.91e-144491254
                         HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                         +++h+e+ErrRR+riN  +++Lr+llP+      +K +Ka+ L ++v+++k+L
  Manes.18G059400.1.p 44 CKSHKEAERRRRQRINAHLSTLRTLLPST-----TKTDKASLLAEVVHHVKEL 91
                         789*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.8854291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-124491IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.02E-134597IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.1E-144594IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.69E-134594No hitNo description
SMARTSM003539.0E-134897IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2608.6E-4144194No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MLPFQSCYEF AHRDPSLVNV MDLDAGESIL SSSSRSEKKS TDACKSHKEA ERRRRQRINA  60
HLSTLRTLLP STTKTDKASL LAEVVHHVKE LRSQAAHVAR HQDTDGSCSI SCSVRGAEPE  120
HFCAFPGESD EATLSYCDGE VKTMMVSVCC EDRPGLNRDL SHAIRLVRAR AVRAEMMTVG  180
GRTKSVVVLQ WASGGDGGDD EVGILRRALK AVVENRVSGS GLGQVVHGNK RVRGYGLVSC  240
DDEFGNQK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.18G059400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021600157.10.0transcription factor bHLH30-like
TrEMBLA0A2C9U0Z10.0A0A2C9U0Z1_MANES; Uncharacterized protein
STRINGcassava4.1_031722m1e-131(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF114412834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56770.11e-21bHLH family protein