PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.18G061600.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family ZF-HD
Protein Properties Length: 255aa    MW: 27423.5 Da    PI: 7.615
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.18G061600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer98.26e-3154109359
          ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                          +vrY+eClkNhA+s+G h+vDGCgEfm++ geegt +al CaAC+CHRnFHR+e++ 
  Manes.18G061600.1.p  54 SVRYRECLKNHAVSIGRHTVDGCGEFMAA-GEEGTLDALICAACNCHRNFHRKETDG 109
                          79**************************9.999*********************875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.4E-2955107IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257747.0E-2256108IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.0E-2856106IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152325.97757106IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466892.45E-21178252IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.0E-32182253IPR009057Homeodomain-like
TIGRFAMsTIGR015652.6E-27191247IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MDFDEHEDQE EDMPMAASPV YDTISDSSRL KTGPAGGEGA PATATSNTRK SGSSVRYREC  60
LKNHAVSIGR HTVDGCGEFM AAGEEGTLDA LICAACNCHR NFHRKETDGA SEGIYHHHQQ  120
HAKFSPLYRA PPPAGYLHLT PAPQIRPLAL PAASAGGAGG AIIGGGYSRE EEDVSNPSSS  180
GGGGGACGSS KKRFRTKFTQ EQKDKMLDFA EKLGWRIQKH DEAAVEQFCA EYGVKRRVLK  240
VWMHNNKHTV GKKP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A3e-281902491675ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.18G061600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021600925.10.0zinc-finger homeodomain protein 2-like
SwissprotQ6YXH51e-72ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
TrEMBLA0A2C9U1W90.0A0A2C9U1W9_MANES; Uncharacterized protein
STRINGcassava4.1_014478m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.11e-66homeobox protein 22
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]