PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.18G063000.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family bHLH
Protein Properties Length: 334aa    MW: 37343 Da    PI: 6.5146
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.18G063000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH413.4e-13133184155
                          CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i   A++++k+L+
  Manes.18G063000.1.p 133 QRMTHIAVERNRRKQMNEYLAVLRSLMPPS---YVQRGDQASIIGGAINFVKELE 184
                          79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.96E-13131188No hitNo description
PROSITE profilePS5088815.459132183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.06E-16132199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-13133197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-10133184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-10138189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MALEAVVYPQ DPFSYGYKDC FSFPFGGAWG YDFDLQEEDK VFLGIPAEHS SNNIEQRHGL  60
RSNLDSSSPS MIQHAKDHWD PNSSPETCAV DQSFPPPPPP GVFHPMVPPP TTAGRRKRRR  120
TKSTKNKEEI ENQRMTHIAV ERNRRKQMNE YLAVLRSLMP PSYVQRGDQA SIIGGAINFV  180
KELEQHLQTM EAHKKTKQQP AADDVSGFSS SPFADFFTFP QYSSTRTLPA GEESVADQSQ  240
WSVADIEVTM VESHANLKIL SKKRPKQLLK MVSGLQALRF SVLHLNVSTV DQLVLYSVSV  300
KVEEGSHLNT VDEIAAAVNQ MLQRIHEEDA GFS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1115119RKRRR
2115120RKRRRT
3133144RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.18G063000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021600783.10.0transcription factor bHLH96-like
SwissprotQ9C7T41e-104BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A2C9U1340.0A0A2C9U134_MANES; Uncharacterized protein
STRINGcassava4.1_011679m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71834135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.11e-100bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]