PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.18G063800.2.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family HB-other
Protein Properties Length: 218aa    MW: 24987.6 Da    PI: 4.8894
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.18G063800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.21.4e-085799345
                         --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHH CS
             Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVk 45
                         k++++t eq+++Le+ Fe ++++  e++ +LA++lgL++rq+k
  Manes.18G063800.2.p 57 KKRRLTLEQVKALEKSFEVENKLEPEKKLKLAEELGLQQRQIK 99
                         56689************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.9E-104599IPR009057Homeodomain-like
SuperFamilySSF466893.08E-84999IPR009057Homeodomain-like
PROSITE profilePS500719.15152112IPR001356Homeobox domain
SMARTSM003890.002555112IPR001356Homeobox domain
PfamPF000466.0E-65799IPR001356Homeobox domain
CDDcd000868.03E-75799No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MKRFSSSDSF AALVSISSSK EEKTQKSTQE YTREFQAMLD SLEEEGHSEE AIHATEKKRR  60
LTLEQVKALE KSFEVENKLE PEKKLKLAEE LGLQQRQIKE LKAKLREENA ESSHSVKEET  120
PVSESENNVS VHSQSHEFSD NNHSSPTIKD QSDCLPSHAL MNWIQLTESR TILGNGFQVY  180
QPHVVKIEEQ NLFNTEESCN FFSVDQAPTL YWHFPEQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.18G063800.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021600536.11e-158homeobox-leucine zipper protein ATHB-6-like isoform X2
TrEMBLA0A2C9U1431e-156A0A2C9U143_MANES; Uncharacterized protein
STRINGcassava4.1_014014m1e-114(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22430.13e-09homeobox protein 6