PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.18G072400.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family ARF
Protein Properties Length: 594aa    MW: 65703.1 Da    PI: 5.9587
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.18G072400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B378.66.6e-25123224199
                          EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                          f k+ltpsd+++ g +++p+ +a+++        +++ +  tlt++d +g +W++++iyr++++r++lt+GW++Fv+ ++L +gD+vvF+
  Manes.18G072400.1.p 123 FAKILTPSDANNGGGFSVPRFCADSIfpplnyqAEPPVQ--TLTVTDIHGVTWDFRHIYRGTPRRHLLTTGWSKFVNHKKLIAGDSVVFM 210
                          89*********************999****985444444..9************************************************ PP

                          E-SSSEE..EEEEE-S CS
                   B3  84 ldgrsefelvvkvfrk 99 
                            ++  +e++++v+r+
  Manes.18G072400.1.p 211 --RNLAGEMFIGVRRA 224
                          ..5689999****996 PP
2Auxin_resp84.32.5e-28272356183
           Auxin_resp   1 aahaastksvFevvYnPrast.seFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                          a+++a+++ +FevvY+Pra++ s+Fvvk+  ve+al+v +++GmR+kma+etedss+ ++ +Gt+++ s  +   W+ S+Wr+L+
  Manes.18G072400.1.p 272 AVERATQGLPFEVVYYPRAGWySDFVVKATLVERALNVFWTAGMRVKMAMETEDSSRMTWfQGTISSASVPECGPWRFSPWRMLQ 356
                          678999*************9779************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.1E-34116233IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.7E-31118242IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.2E-20123225IPR003340B3 DNA binding domain
PfamPF023623.5E-22123224IPR003340B3 DNA binding domain
PROSITE profilePS5086312.506123225IPR003340B3 DNA binding domain
CDDcd100176.08E-21123223No hitNo description
PfamPF065077.4E-26272356IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0010208Biological Processpollen wall assembly
GO:0048830Biological Processadventitious root development
GO:0052543Biological Processcallose deposition in cell wall
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 594 aa     Download sequence    Send to blast
MPPLPPSSDL RRLDPRIWRA CAGSSVHIPT VNSRVYYFPQ GHLEQYSSSA SNNVSALARS  60
IPFIPCHISA VQFLADPVTD EVYTKLHLYP IDPPLNQSLS MMESSARPER EGADDDEDKI  120
VAFAKILTPS DANNGGGFSV PRFCADSIFP PLNYQAEPPV QTLTVTDIHG VTWDFRHIYR  180
GTPRRHLLTT GWSKFVNHKK LIAGDSVVFM RNLAGEMFIG VRRAVRSNNG SDCARWREQI  240
GCGTGDVKIK VKDEGFSRSG RGRVSQEAVM EAVERATQGL PFEVVYYPRA GWYSDFVVKA  300
TLVERALNVF WTAGMRVKMA METEDSSRMT WFQGTISSAS VPECGPWRFS PWRMLQITWD  360
EPEVLQIAKR VSPWQVEILA PAPPIHAAFP PAKRFKFPEN SGLQTDGKGE LFFPMSGLSN  420
STIGNVNQSL LNYNIFPAGM QGARQDPFSI FGLSNFLSEN ASQICPDNVF DNKMVPKLET  480
VSTELNIGSS QSDNLTPNSQ SSVHFFATEL VGNPGCNSAK VGVDSFQLFG QIIHMNQPVE  540
SGFDDVGYMR DYGSKEYTEN NPPDLALASS YTELLNRIDV QHQGASAVES CSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A3e-651737923355Auxin response factor 1
4ldy_B3e-651737923355Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.18G072400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021601794.10.0auxin response factor 17
SwissprotQ84WU60.0ARFQ_ARATH; Auxin response factor 17
TrEMBLA0A2C9U2540.0A0A2C9U254_MANES; Auxin response factor
STRINGcassava4.1_004122m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40303056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.10.0auxin response factor 17
Publications ? help Back to Top
  1. Shi ZH, et al.
    Overexpression of AtTTP affects ARF17 expression and leads to male sterility in Arabidopsis.
    PLoS ONE, 2015. 10(3): p. e0117317
    [PMID:25822980]
  2. de Lucas M, et al.
    Transcriptional Regulation of Arabidopsis Polycomb Repressive Complex 2 Coordinates Cell-Type Proliferation and Differentiation.
    Plant Cell, 2016. 28(10): p. 2616-2631
    [PMID:27650334]
  3. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  4. Wang B, et al.
    Fine regulation of ARF17 for anther development and pollen formation.
    BMC Plant Biol., 2017. 17(1): p. 243
    [PMID:29258431]
  5. Wójcik AM,Nodine MD,Gaj MD
    miR160 and miR166/165 Contribute to the LEC2-Mediated Auxin Response Involved in the Somatic Embryogenesis Induction in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 2024
    [PMID:29321785]
  6. Lin JS, et al.
    MicroRNA160 Modulates Plant Development and Heat Shock Protein Gene Expression to Mediate Heat Tolerance in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 68
    [PMID:29449855]