PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.18G074000.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C2H2
Protein Properties Length: 404aa    MW: 44406.8 Da    PI: 9.2901
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.18G074000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.13.7e-06170192223
                          EETTTTEEESSHHHHHHHHHH.T CS
              zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                          +Cp Cg+ F  ++nL++H+ + H
  Manes.18G074000.1.p 170 SCPECGEIFVKPENLEHHQAVrH 192
                          8******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.224169197IPR007087Zinc finger, C2H2
PROSITE patternPS000280169192IPR007087Zinc finger, C2H2
SuperFamilySSF563993.74E-23194401No hitNo description
Gene3DG3DSA:3.90.228.109.4E-18195400IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MKPIKEIHQN QNQNQHPQKS EPSPSWLAVR GLLTCKDLQK QQQQEQALEE TSKKCKKMKC  60
SGSLCSNTKV MHRPETASPE VQRKRAAVRL TSNNNTSCRS MKAPLNEING VPSSTTSSLS  120
VSSNSSINGA SGSFKGMPFR RLSGCYECRM VVDPVIGFTR DPSLRSSICS CPECGEIFVK  180
PENLEHHQAV RHAVSELGPE DTSKNIVEII FQSSWLKKES PICQIDRILK VHNTQRTISR  240
FEEYRDSIKA KATKLPKKHP RCIADGNELL RFHCTSFACS LGVNGSSNLC NSIPHCNVCS  300
IIKNGFKEST AAGGKGNGIL TTATSGKAHD KAKILEESNG KSDKRAMLVC RVVAGRVKKN  360
MESNMEEYDS VAGAVGFYSN LNELYVFNAR AILPCFVVIY GGF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.18G074000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021600605.10.0uncharacterized protein LOC110606149
TrEMBLA0A2C9U2720.0A0A2C9U272_MANES; Uncharacterized protein
STRINGcassava4.1_008183m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84732128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.11e-102C2H2-like zinc finger protein