PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.18G085800.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family GRAS
Protein Properties Length: 584aa    MW: 65096.4 Da    PI: 4.6974
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.18G085800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS460.11.3e-1402155833374
                 GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                          +lL++cA+a+++g++e+a+al+++l++l+s +gdp qR+aay++e+Laar+a+s++ lykal+++e +   ss++laa+++++ev+P++k
  Manes.18G085800.1.p 215 RLLFNCANAIAEGNFEAADALINELRQLVSIQGDPPQRIAAYMVEGLAARMASSGKYLYKALKCKEPP---SSDRLAAMQILFEVCPCFK 301
                          79*****************************************************************9...9****************** PP

                 GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180
                          f++++aN aI ea  ge+rvHiiDfdi+qG Q+++L+q+La++p++pp lR+Tgv++pes+      l+ +g+rL+k+Ae+l+vpfef++
  Manes.18G085800.1.p 302 FGFMAANGAIIEASRGEKRVHIIDFDINQGSQYITLIQTLANQPGKPPYLRLTGVDDPESVqrPIGGLKIVGQRLEKLAEALKVPFEFHA 391
                          ***********************************************************99878899*********************** PP

                 GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfds 270
                           va++++ +++++L++kpgEal+Vn+++qlh+++desvs+ +erd++L++vksl+Pk+v+vveq++++n+++F+ rf+ea +yysa+fds
  Manes.18G085800.1.p 392 -VASKTSLVSPSMLDCKPGEALVVNFAFQLHHMPDESVSTVNERDQLLRMVKSLNPKLVTVVEQDVNTNTAPFFPRFVEAYNYYSAVFDS 480
                          .7**************************************************************************************** PP

                 GRAS 271 leaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvl 360
                          l+a+lpres++r++vE+++l+r+ivn+vaceg+er+er e ++kWr+r+++aGF + p++ +++++++ l++ + ++ y+++ee g+l+l
  Manes.18G085800.1.p 481 LDATLPRESQDRVNVEKQCLARDIVNIVACEGDERIERYEVAGKWRARMTMAGFASCPMGPNVVDTIRKLIKLYCDR-YTLKEEMGALLL 569
                          **************************************************************************966.************ PP

                 GRAS 361 gWkdrpLvsvSaWr 374
                          gW+d++L++ SaWr
  Manes.18G085800.1.p 570 GWEDKSLIVSSAWR 583
                          *************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098568.415187564IPR005202Transcription factor GRAS
PfamPF035144.5E-138215583IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 584 aa     Download sequence    Send to blast
MSLVRPAELS ATPYRNNKLY SLNGSNENSG LSTQLFGSDK RKTMYMADSY SSESYEKYFI  60
DSPTEEIIQP SSSSISGNSF HLQDPSSYKP RMGSESSITI QDPYNTFASV RHRGAYQLNS  120
ELDYQSPDTV DYDADEMRLK LQELERALLD DNGDDDEDDM FGNSQSMEID GEWSEPIQNV  180
MLHDSPKESS SSDSNLSSIS STKEVSQLSP RAPKRLLFNC ANAIAEGNFE AADALINELR  240
QLVSIQGDPP QRIAAYMVEG LAARMASSGK YLYKALKCKE PPSSDRLAAM QILFEVCPCF  300
KFGFMAANGA IIEASRGEKR VHIIDFDINQ GSQYITLIQT LANQPGKPPY LRLTGVDDPE  360
SVQRPIGGLK IVGQRLEKLA EALKVPFEFH AVASKTSLVS PSMLDCKPGE ALVVNFAFQL  420
HHMPDESVST VNERDQLLRM VKSLNPKLVT VVEQDVNTNT APFFPRFVEA YNYYSAVFDS  480
LDATLPRESQ DRVNVEKQCL ARDIVNIVAC EGDERIERYE VAGKWRARMT MAGFASCPMG  540
PNVVDTIRKL IKLYCDRYTL KEEMGALLLG WEDKSLIVSS AWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-6821958225378Protein SCARECROW
5b3h_A2e-6821958224377Protein SCARECROW
5b3h_D2e-6821958224377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.18G085800.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021601182.10.0scarecrow-like protein 1
RefseqXP_021601183.10.0scarecrow-like protein 1
RefseqXP_021601184.10.0scarecrow-like protein 1
RefseqXP_021601185.10.0scarecrow-like protein 1
SwissprotQ9SDQ30.0SCL1_ARATH; Scarecrow-like protein 1
TrEMBLA0A251IRR00.0A0A251IRR0_MANES; Uncharacterized protein
STRINGcassava4.1_004272m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49883457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0SCARECROW-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]