PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.18G097600.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family M-type_MADS
Protein Properties Length: 220aa    MW: 24990.3 Da    PI: 7.4517
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.18G097600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF67.81e-212569145
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                         k++e + +r vtfskR+ g++KKA ELS+LC+aevavi+fs++gk
  Manes.18G097600.1.p 25 KKVEKENRRCVTFSKRKSGMFKKATELSTLCGAEVAVILFSEHGK 69
                         5678999************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.7E-291776IPR002100Transcription factor, MADS-box
PROSITE profilePS5006625.1191777IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.66E-271892IPR002100Transcription factor, MADS-box
CDDcd002651.16E-311886No hitNo description
PRINTSPR004043.1E-191939IPR002100Transcription factor, MADS-box
PfamPF003195.4E-222672IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-193954IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-195475IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MDATTDLSDQ RPLRKSRGRR KIEIKKVEKE NRRCVTFSKR KSGMFKKATE LSTLCGAEVA  60
VILFSEHGKA FSCGNPNMDK VLDRYLAETE EGEYNSCVLE SGSNGDIVTQ TLQKQEYEKS  120
LRRLEEMKRA LKMVEKKSNN VKKGEFWWDL PMDNMEKEEL EGYKESLEEL KKNVMARIEV  180
MAAHHAAGES SIINQFIDHN GVWSSSTASY DAGFNNGFL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A5e-1818117293MEF2 CHIMERA
6byy_B5e-1818117293MEF2 CHIMERA
6byy_C5e-1818117293MEF2 CHIMERA
6byy_D5e-1818117293MEF2 CHIMERA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.18G097600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021600100.11e-163agamous-like MADS-box protein AGL62
TrEMBLA0A2C9U2X81e-162A0A2C9U2X8_MANES; Uncharacterized protein
STRINGcassava4.1_023979m1e-150(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-22AGAMOUS-like 62