PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.18G104500.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family M-type_MADS
Protein Properties Length: 160aa    MW: 18336.2 Da    PI: 10.0898
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.18G104500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF45.69.1e-151150342
                         --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
               SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                         i n+  r+vtf kR++g+lKK  EL +LC++ ++ iifs 
  Manes.18G104500.1.p 11 IPNEAARKVTFKKRKAGLLKKLDELTTLCGVIACAIIFSD 50
                         78999*********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004329.4E-18160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.834150IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.11E-22294IPR002100Transcription factor, MADS-box
CDDcd002667.09E-20285No hitNo description
PRINTSPR004041.0E-6323IPR002100Transcription factor, MADS-box
PfamPF003195.3E-161150IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-62338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MGRQMVKHEL IPNEAARKVT FKKRKAGLLK KLDELTTLCG VIACAIIFSD YRTSPEVWPS  60
HSQAVSVLEK FKNLPPKKQS KYMLDQESFL TRNISKLTEK LEKLKKKNER MELELIYAES  120
IARSKVDSSK NSKDKNDSSN LLEEYLESII TKKNKSEDQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.18G104500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021600652.11e-112agamous-like MADS-box protein AGL80
TrEMBLA0A2C9U2591e-111A0A2C9U259_MANES; Uncharacterized protein
STRINGcassava4.1_031607m1e-112(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF144641115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22590.22e-34AGAMOUS-like 87