PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.18G104700.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

bHLH

Protein Properties

Length: 275aa MW: 30187.8 Da PI: 9.8635

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.18G104700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	20.3	1e-06	218	243	6	30
HHHHHHHHHHHHHHHHHHHCTSCC.C CS HLH 6 nerErrRRdriNsafeeLrellPk.a 30 +++Er RR ri +++ +L+el+P+ + Manes.18G104700.1.p 218 SIAERVRRTRISDRIRKLQELVPNmD 243 689********************955 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	4.06E-6	215	247	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.6E-5	217	247	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
FRFPLNKQRS SQLNSLRKRM QPTPLVSGNS SRGGGGGSEL IGSGLARFRS APATWLEALL 60 EDEEEEDPLK PNRTLTQLLA SNNPTRNSVP LASSSSLSSS FLSGNLFEPT GFQRQNSSPA 120 DFLGDSGPGS DGYFSSFGIP SNYDYISPMD VSPSGEKARE VELHHPSTKY PSLLKGEQSG 180 RVAGEVSTLM EMEIEKLLED SVPYRVRAKR GCATHPRSIA ERVRRTRISD RIRKLQELVP 240 NMDKVNNAQL KSRGSNGENW KSLRAWTGVF CLLQ*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.18G104700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021600983.1	0.0	transcription factor bHLH80-like isoform X1
Swissprot	Q9C8P8	8e-67	BH080_ARATH; Transcription factor bHLH80
TrEMBL	A0A2C9U201	0.0	A0A2C9U201_MANES; Uncharacterized protein (Fragment)
STRING	cassava4.1_020939m	1e-162	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9132	30	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G35460.1	3e-53	bHLH family protein

Link Out ? help Back to Top
Phytozome	Manes.18G104700.1.p