PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.18G104700.2.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

bHLH

Protein Properties

Length: 251aa MW: 27468.7 Da PI: 8.4454

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.18G104700.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	19.5	1.8e-06	218	241	6	29
HHHHHHHHHHHHHHHHHHHCTSCC CS HLH 6 nerErrRRdriNsafeeLrellPk 29 +++Er RR ri +++ +L+el+P+ Manes.18G104700.2.p 218 SIAERVRRTRISDRIRKLQELVPN 241 689********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	9.407	212	250	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	8.37E-6	215	244	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.9E-5	217	243	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence Send to blast
FRFPLNKQRS SQLNSLRKRM QPTPLVSGNS SRGGGGGSEL IGSGLARFRS APATWLEALL 60 EDEEEEDPLK PNRTLTQLLA SNNPTRNSVP LASSSSLSSS FLSGNLFEPT GFQRQNSSPA 120 DFLGDSGPGS DGYFSSFGIP SNYDYISPMD VSPSGEKARE VELHHPSTKY PSLLKGEQSG 180 RVAGEVSTLM EMEIEKLLED SVPYRVRAKR GCATHPRSIA ERVRRTRISD RIRKLQELVP 240 NMDKVEGELL *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.18G104700.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021600984.1	1e-166	transcription factor bHLH80-like isoform X2
Swissprot	Q9C8P8	6e-67	BH080_ARATH; Transcription factor bHLH80
TrEMBL	A0A2C9U359	1e-180	A0A2C9U359_MANES; Uncharacterized protein (Fragment)
STRING	cassava4.1_020939m	1e-161	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G35460.1	2e-53	bHLH family protein

Link Out ? help Back to Top
Phytozome	Manes.18G104700.2.p