PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.18G104700.4.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

bHLH

Protein Properties

Length: 261aa MW: 28585 Da PI: 9.9546

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.18G104700.4.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	20.4	9.6e-07	204	229	6	30
HHHHHHHHHHHHHHHHHHHCTSCC.C CS HLH 6 nerErrRRdriNsafeeLrellPk.a 30 +++Er RR ri +++ +L+el+P+ + Manes.18G104700.4.p 204 SIAERVRRTRISDRIRKLQELVPNmD 229 689********************955 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.79E-6	201	233	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.5E-5	203	233	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence Send to blast
FRFPLNKQRS SQLNSLRKRM QPTPLVSGNS SRGGGGGSEL IGSGLARFRS APATWLEALL 60 EDEEEEDPLK PNRTLTQLLA SNNPTRNSVP LASSSSLSSS FLSGNLFEPT GFQRQNSSPA 120 DFLGDSGPGS DGYFSSFGIP SNYDYISPMD VSPSGEKARE KGEQSGRVAG EVSTLMEMEI 180 EKLLEDSVPY RVRAKRGCAT HPRSIAERVR RTRISDRIRK LQELVPNMDK VNNAQLKSRG 240 SNGENWKSLR AWTGVFCLLQ *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.18G104700.4.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021600983.1	1e-134	transcription factor bHLH80-like isoform X1
Swissprot	Q9C8P8	1e-63	BH080_ARATH; Transcription factor bHLH80
TrEMBL	A0A2C9U2D2	0.0	A0A2C9U2D2_MANES; Uncharacterized protein (Fragment)
STRING	cassava4.1_020939m	1e-109	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G35460.1	1e-49	bHLH family protein

Link Out ? help Back to Top
Phytozome	Manes.18G104700.4.p